YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60463657
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.96
Transmembrane Helix	50	72	0.92
Non-Cytoplasmic	73	78	0.79
Transmembrane Helix	79	98	0.94
Cytoplasmic	99	108	0.74
Transmembrane Helix	109	128	0.82
Non-Cytoplasmic	129	172	0.87
Transmembrane Helix	173	194	0.93
Cytoplasmic	195	201	0.87
Transmembrane Helix	202	223	0.91
Non-Cytoplasmic	224	230	0.89
Transmembrane Helix	231	253	0.90
Cytoplasmic	254	271	0.88
Transmembrane Helix	272	294	0.91
Non-Cytoplasmic	295	319	0.93
Transmembrane Helix	320	343	0.92
Cytoplasmic	344	368	0.94
Transmembrane Helix	369	388	0.96
Non-Cytoplasmic	389	395	0.82
Transmembrane Helix	396	417	0.92
Cytoplasmic	418	425	0.94
Transmembrane Helix	426	446	0.94
Non-Cytoplasmic	447	452	0.83
Transmembrane Helix	453	472	0.95
Cytoplasmic	473	483	0.86
Transmembrane Helix	484	503	0.94
Non-Cytoplasmic	504	509	0.77
Transmembrane Helix	510	529	0.88
Cytoplasmic	530	546	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYSSKYSPL VKKRNPYNLN SIIRKYPLNG PKDGEDSEAS LNKCLSIIDI ISYGIGSTVG  60
   61 AGVFVSIGIA IATKAGPGTL LSFLFSAIAC LISAFCYSEF SARIPVSGSA YTFAYVSLGE 120
  121 FMGWFVGWNL TLEYAISASA VARGWVGYFQ VIFKIFGKEA PQWISGYSIN EWININPVAP 180
  181 VIIVICTIIL VFGIKDSARF NMAITAINLL TITFFIILGS IHVDRSNWTP FLPFGMTGVF 240
  241 SGCSVVFFSY VGFDSVTTLA GEVKNPKRDL PIGIVGTLVI ATTLYIGVTL VLSGMVNYLD 300
  301 VSQGSPLSDA FIGNGLDMKW AAMIIACGTL TSLTASTLCS LLGQPRIYLQ MAKDGLFFEK 360
  361 FTSMNKKQVP VFGTVFTGVF ASILAIVLDL DNLTNMISIG TLLAFTAVCA GVVVMRFRRE 420
  421 DGGEDGFPSA FILLILFVFA CVFGISSKLG WNMWIQIALG ACQAVIIGLV WLKKQINIPT 480
  481 SFRCPFNPIL PCLGIVVNTF FIMHLDTPSF YRVAAWTALG SSIYFIYGIR HSKLNQLDTV 540
  541 EDSINH