YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PSIM_DICDI
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKINNNKIF VLFLTILLYL LNITTAQKPV SINIKIFDQL PLYNDNFGSQ SRAATIKSMV  60
   61 ATSLNTTFKT PSLGSATSSL PSPQLFQYWF QSNFANETKN SGLNAPLTRT ITLNYDSDSG 120
  121 NYIFNNPNFF LIDTDGFDKT ASNRIYKDST GTYHNYHYCV AFNYVFKPDG QGKEMFKFTG 180
  181 NDDVWVFVNN KLLLDGGGVR SPEATTVDFT KAGLVKSQET PLDFFYCERS TNSPPSFKIE 240
  241 TNLGGLYCKA YDYCGVCNGD GGTCCNPQTD CLTQLENGTL INDKCTIPIC PPLDTQIDKN 300
  301 LGIGFFCQHS QIPDPYAGSL CEKGECDSLT GIWTRNTSIC PTDKDLAPQC RKQATCDPKL 360
  361 GCQSTYLCNN VCDIGTCNNG TCTQKTSNDC VQELDRGVED KCFTYKCVPN VGCSKTPICP 420
  421 RGTDPCKNYT CSGGICGTVD IPQSECSCPC PGLNKCNTRI CNPDNTCTLF NLTEINDGNP 480
  481 CTDDLCDPVT GDITHVMTTR CSGCNTCDVK TGKCVAQDSH CDDGNPCTDN ACVASANSTA 540
  541 NSQVGQCTQT PTAKCDLGDK CMVYSCTLEG GCNATQRVCP NSGACKIGYC EPGFGCKLKD 600
  601 RVCSSDWYCI EAQCDAKYGC IQFDRRCAPD NSKCQEGVCV NNTAIGKNDG KCISEDYDPK 660
  661 PFVCQKAALV STAVIASVVV VGAVVLGAAI FAGKKGYDAW KTSQGNVMAA SQANPLYTQS 720
  721 SNGGENPLYN SPT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle