YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60467685
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	48	0.91
Non-Cytoplasmic	49	65	0.80
Transmembrane Helix	66	83	0.92
Cytoplasmic	84	91	0.77
Transmembrane Helix	92	113	0.88
Non-Cytoplasmic	114	121	0.87
Transmembrane Helix	122	146	0.88
Cytoplasmic	147	154	0.73
Transmembrane Helix	155	175	0.89
Non-Cytoplasmic	176	190	0.85
Transmembrane Helix	191	212	0.95
Cytoplasmic	213	268	0.95
Transmembrane Helix	269	290	0.90
Non-Cytoplasmic	291	299	0.85
Transmembrane Helix	300	318	0.92
Cytoplasmic	319	332	0.74
Transmembrane Helix	333	356	0.81
Non-Cytoplasmic	357	361	0.87
Transmembrane Helix	362	384	0.92
Cytoplasmic	385	395	0.91
Transmembrane Helix	396	417	0.87
Non-Cytoplasmic	418	430	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNRDEYSPL VDITETSKAP LDKNGLAWIC FLILGVGLLF PFNCYVAASD YFSDLYGDSY  60
   61 SFLMSLAYNY IQWLLLFVSI FVMPRFSFKS RTILFLLAGS LILFYMPFNN MIFGRNEKVS 120
  121 MGISLLCTFA SGCLASLLFG TVLGLVALFP GEYTGAVMSG NGVAGMIAMA LQIITKVSVP 180
  181 ATAHGNQESG LIFFFLAGGV LIICLLCFLV LLQLPITKYY LANFEASKLK ENGSVNGIES 240
  241 GDGDAKPKKS ARQWMGELLN ILKKVWREAL VVFTVFFTTL SIFPGLTQLI QTSNEHQLSS 300
  301 DWFIIVFFSI FMVGDFIGRT VPKWFIIFTP SNLWIPTFLR LAFFPLFALC IKPLVFNNNA 360
  361 WYFVFMFIFS ISNGYCGTLA MIFGPTKAEE HEKEYAGIIM SFFLNFGIWV STHFAFLLSY 420
  421 LVTGSTGINF