YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SODC3_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLSVLVFL ISVISIAKAD YQYAFCKFNE LSIGGVEGIA HLLSTDGTTL NITFDFTTSY  60
   61 AQNTQFAAQI LTYGYNPSSM TNLGSVFDPT NVKTAGCPSG TPRAGDIGNI QANGGNVEAQ 120
  121 TISLNIPNIK DDANSIIGRS IAIYGGSYDC SDPSKSVIGD MISFCTIGVG NIDYSSFDKS 180
  181 KLTGVNTASS YSNLENAIGL AVVYNTTITK GDYIEGRVLF KALNSSFIQV SAKVSGLSYQ 240
  241 AHGFHVHQFG DVSSDNGTSI GGHFLKTGQE HSLPPSGTRH YGDFGNFCAF SQDMMDTGYY 300
  301 YYETDHVTAA LVIGRGMAVH NFTDKGNSDV GGSRCGQGVI ALIQDADYSL NLPMDWKWDV 360
  361 ICANGSYYGD MSTSMNSESY NDNEPGSSST VIPFFALIIF SIIFALL

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	385	0.99
Transmembrane Helix	386	406	0.70
Cytoplasmic	407	407	0.77