YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190405504
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.99
Transmembrane Helix	93	114	0.89
Non-Cytoplasmic	115	121	0.67
Transmembrane Helix	122	156	0.61
Cytoplasmic	157	169	0.56
Transmembrane Helix	170	192	0.76
Non-Cytoplasmic	193	200	0.66
Transmembrane Helix	201	220	0.94
Cytoplasmic	221	234	0.69
Transmembrane Helix	235	260	0.86
Non-Cytoplasmic	261	288	0.75
Transmembrane Helix	289	308	0.74
Cytoplasmic	309	323	0.90
Transmembrane Helix	324	345	0.92
Non-Cytoplasmic	346	376	0.96
Transmembrane Helix	377	397	0.90
Cytoplasmic	398	419	0.82
Transmembrane Helix	420	439	0.94
Non-Cytoplasmic	440	451	0.86
Transmembrane Helix	452	475	0.87
Cytoplasmic	476	496	0.92
Transmembrane Helix	497	517	0.94
Non-Cytoplasmic	518	526	0.77
Transmembrane Helix	527	547	0.94
Cytoplasmic	548	590	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNSKEDADI EEKHMYNEPV TTLFHDVEAS QTHHRRGSIP LKDEKSKELY PLRSFPTRVN  60
   61 GEDTFSMEDG IGDEDEGEVQ NAEVKRELKQ RHIGMIALGG TIGTGLFIGL STPLTNAGPV 120
  121 GALISYLFMG SLAYSVTQSL GEMATFIPVT SSFTVFSQRF LSPAFGAANG YMYWFSWAIT 180
  181 FALELSVVGQ VIQFWTYKVP LAAWISIFWV IITIMNLFPV KYYGEFEFWV ASIKVLAIIG 240
  241 FLIYCFCMVC GAGVTGPVGF RYWRNPGAWG PGIISKDKNE GRFLGWVSSL INAAFTFQGT 300
  301 ELVGITAGEA ANPRKSVPRA IKKVVFRILT FYIGSLLFIG LLVPYNDPKL TQSTSYVSTS 360
  361 PFIIAIENSG TKVLPHIFNA VILTTIISAA NSNIYVGSRI LFGLSKNKLA PKFLSRTTKG 420
  421 GVPYIAVFVT AAFGALAYME TSTGGDKVFE WLLNITGVAG FFAWLFISIS HIRFMQALKY 480
  481 RGISRDELPF KAKLMPGLAY YAATFMTIII IIQGFTAFAP KFNGVSFAAA YISVFLFLAV 540
  541 WILFQCIFRC RFIWKIGDVD IDSDRRDIEA IVWEDHEPKT FWDKFWNVVA