YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21952874, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	260	0.92
Transmembrane Helix	261	283	0.87
Non-Cytoplasmic	284	302	0.90
Transmembrane Helix	303	327	0.89
Cytoplasmic	328	340	0.87
Transmembrane Helix	341	362	0.89
Non-Cytoplasmic	363	368	0.83
Transmembrane Helix	369	387	0.93
Cytoplasmic	388	403	0.83
Transmembrane Helix	404	423	0.87
Non-Cytoplasmic	424	428	0.78
Transmembrane Helix	429	450	0.86
Cytoplasmic	451	459	0.89
Transmembrane Helix	460	482	0.89
Non-Cytoplasmic	483	489	0.79
Transmembrane Helix	490	510	0.92
Cytoplasmic	511	516	0.85
Transmembrane Helix	517	537	0.89
Non-Cytoplasmic	538	546	0.73
Transmembrane Helix	547	569	0.88
Cytoplasmic	570	625	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANGVIPDV MMPSLLADVE VSHLAGFDVT PSPHAEPSPR PQLRHDNPSR SRVPPLERVS  60
   61 RRSEVVFPPL DSPFQAPGYR SVQPVSISLP ASPTGFGVPV ALPIAVGDAG EPADLRRQAM 120
  121 SNAARDAEEQ QLAAQGKGSN NNVRFVQPDK VVFRSQPIPG GKPARRAASN RGGRMMSRDR 180
  181 RYDSFKTWSG KLERQLTHLA GAGPEVPEEE EDGCDGDAIS SHHTKSMPQV DRFFAALEGP 240
  241 ELDKLRSSEE LVLPSDKTWP FLLRFPVSAF GICLGVSSQA ILWKTVATST PTRFLHVTTK 300
  301 VNLVLWCVSL ALMCVIAAIY ACKVVFFFEA VRREYYHPIR VNFFFAPWIA CLFLAIGVPP 360
  361 SVATELPRWL WYALMTPILC MELKIYGQWM SGGQRRLSKV ANPSNHLSVV GNFVGALLGA 420
  421 SMGLKEGPVF FFSVGLAHYT VLFVTLYQRL PTNETLPKEL HPVFFLFVAA PSVACMAWAK 480
  481 ITGEFGLGSR VAYFIAMFLY ASLAVRINFF RGFRFSLAWW AYTFPMTGAA IASIRYSTEV 540
  541 DNAFTKALCV ALSVLAMLTV LALLATTIVH GFVLRNLFPN DISIAITERK VKPIVELHEM 600
  601 LGSNDSAAGR SNDDIEAGVA TVESS