YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17861732
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYRVATRIG PPYFSYNETA RELNLTGNAL YQGYAVDLID AIARHVGFEY VFVPVADQQY  60
   61 GKLDKETKQW NGIIGEIINN DAHMGICDLT ITQARKTAVD FTVPFMQLGV SILAYKSPHV 120
  121 EKTLDAYLAP FGGEVWIWIL ISVFVMTFLK TIVARISKMD WENPHPCNRD PEVLENQWRI 180
  181 HNTGWLTVAS IMTAGCDILP RSPQVRMFEA TWWIFAIIIA NSYTANLAAF LTSSKMEGSI 240
  241 ANLKDLSAQK KVKFGTIYGG STYNLLADSN ETVYRLAFNL MNNDDPSAYT KDNLEGVDRV 300
  301 RKNRGDYMFL METTTLEYHR EQNCDLRSVG EKFGEKHYAI AVPFGAEYRS NLSVAILKLS 360
  361 ERGELYDLKQ KWWKNPNASC FEEPDPDATP DMTFEELRGI FYTLYAGILI AFLIGITEFL 420
  421 VYVQQVALEE RLTFKDAFKK EIRFVLCVWN NRKPIVAGTP ISSVRTTPRR SLDKSLDRTP 480
  481 KSSRRVVIGR SSEEMREMAQ GSGSSSGSNN AGRGEKEARV

Type	Start	End	Confidence
Cytoplasmic	1	97	0.81
Transmembrane Helix	98	115	0.58
Non-Cytoplasmic	116	134	0.62
Transmembrane Helix	135	154	0.87
Cytoplasmic	155	182	0.75
Transmembrane Helix	183	201	0.67
Non-Cytoplasmic	202	209	0.68
Transmembrane Helix	210	231	0.89
Cytoplasmic	232	400	0.79
Transmembrane Helix	401	422	0.89
Non-Cytoplasmic	423	520	0.82