YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4630-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.93
Transmembrane Helix	33	54	0.88
Non-Cytoplasmic	55	161	0.98
Transmembrane Helix	162	183	0.92
Cytoplasmic	184	190	0.90
Transmembrane Helix	191	211	0.92
Non-Cytoplasmic	212	216	0.83
Transmembrane Helix	217	239	0.91
Cytoplasmic	240	251	0.86
Transmembrane Helix	252	271	0.95
Non-Cytoplasmic	272	278	0.75
Transmembrane Helix	279	295	0.94
Cytoplasmic	296	373	0.95
Transmembrane Helix	374	396	0.87
Non-Cytoplasmic	397	406	0.86
Transmembrane Helix	407	428	0.93
Cytoplasmic	429	434	0.94
Transmembrane Helix	435	456	0.91
Non-Cytoplasmic	457	462	0.68
Transmembrane Helix	463	484	0.90
Cytoplasmic	485	494	0.76
Transmembrane Helix	495	516	0.86
Non-Cytoplasmic	517	523	0.75
Transmembrane Helix	524	543	0.93
Cytoplasmic	544	563	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPAAGAAS AVLDFDDILV EIGEFGRFQR RNYLLICLPV LFAAANSLSY VFTAGSPTYR  60
   61 CYVPECDKLV DAEYGANWVS IAVPGSWSKR GHFTPSTCER FVANGDHLES SSDPWSAWPL 120
  121 DQCFAENFTT ETERCNQFVY GSSERTIVQQ WGLQCPENLW KLAFVGTIHF AGLVVGTALS 180
  181 GYLADRYGRK HIFLFCIVFM ALTGVAQALS WDYISFLFFA LLNAVGTSGV YPLAFIIGVE 240
  241 MVGPRKREMS SIVLNYFYAV GEALLGLSVF LPDWRQLQLA LSVPPLICVA YFWLVPESVR 300
  301 WLLARNRREQ AGVIIRRAAK VNRRDISVEL MASFKQQELD AETGQEDDVE GGLHVKKDDK 360
  361 IWLAVKEVAR SHILMGRYAI LLLIWAVNAI VYYGLSLNAT SLSGNKYLNF ALVCLVEIPG 420
  421 YSLAWLFLRR FGRRVALSGS LLLCSITCVA SGFVTLGANW LVVTLFLVGK LGITSSFAVI 480
  481 YTFTAEMMPT VIRSGGVGVM STFARFGAML APFVPLLASY YDPLPLLLFG TLSLVAGLLS 540
  541 LLLPETFNRK LPDTVEEAIA LGK