YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|16182390
Protein type: Transmembrane
Type Confidence: 0.49
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVRQRRTPQ AEANPLSQKI ALVGGGPASL SCATFLARLG YRDVTIYERR SYLGGLSAAE  60
   61 IPQYRLPIDA VNFEIDLVRD LGVRIETGRS LGTKDLTIQG LLSTGHDAVF VGIGLPEPKL 120
  121 NPIFAGLQPS NGFYTSKNFL PLVSDGSKPG LCACKAAAGL PKLHGNVIVL GAGDTAFDCA 180
  181 TSALRCGARR VFVVFRKGSS GIRAVPEEVE LARDERCELL PYLSPRKVIV KDGLITAMEF 240
  241 CRTEQNENDE WVEDEEQTQR LKANFVISAF GSGLEDQDVK AALAPLQFRG ELPVVDRVTM 300
  301 QSSVKQVFLG GDLAGVANTT VESVNDGKVA AWSIHCQLQG LPLDTPAALP LFYTDIDAVD 360
  361 ISVEMCGIRF ENPFGLASAP PTTSTAMIRR AFEQGWGFVV TKTFGLDKDL VTNVSPRIVR 420
  421 GTTSGYKYGP QQGCFLNIEL ISEKRAEYWL KSIGELKRDF PEKIVIASIM CSFNEEDWTE 480
  481 LAIKAEQSGA DALELNLSCP HGMGERGMGL ACGQDPELVE QISRWVRKAV KLPFFIKLTP 540
  541 NITDIVSIAA AAKRGGADGG SAINTVQGLM GLKADSTAWP AIGKEQRTTY GGVSGNATRP 600
  601 MALKAISDIA NRVPGFPILG IGGIDSGEVA LQFIHAGATV LQICSSVQNQ DFTVIEDYCT 660
  661 ALKALLYLKA NPPPVDGPFW DGQSPPTPVH QKGKPVVRLT GEGKATLGFF GPYQRQRDIK 720
  721 MAELRSQKGA LWDAEQVKAT PPASNGAPNP APRIKDVIGA ALDKIGSYNK LDNKQQKVAL 780
  781 IDDDMCINCG KCYMTCADSG YQAIEFDKDT HIPHVNDDCT GCTLCVSVCP IIDCITMVPK 840
  841 KIPHVIKRGV EEKIFYTHAL SQCQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle