YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15677887, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEQNRKPSF PIVMLLVSVA LWIASLSNVA FYLGNHGSME GLTVLILGSI FASLDIRYCA  60
   61 VYANYVWLAA IVLLALRKKV VPVHAALWGL ALVAFSVKAV YVDEAGNTSD IVRYGAGFYL 120
  121 WYAAFAVATI GTFAGKNKER KAASAADGIK MTFDKWLGLS KLPKNEARML LQYVSEYTRV 180
  181 QLLTRGGEEM PDEVRQRADR LAQRRLNGEP VAYILGVREF YGRRFTVNPS VLIPRPETEH 240
  241 LVEAVLARLP ENGRVWDLGT GSGAVAVTVA LERPDAFVRA SDISPPALET ARKNAADLGA 300
  301 RVEFAHGSWF DTDMPSEGKW DIIVSNPPYI ENGDKHLLQG DLRFEPQIAL TDFSDGLSCI 360
  361 RTLAQGAPDR LAEGGFLLLE HGFDQGAAVR GVLAENGFSG VETLPDLAGL DRVTLGKYMK 420
  421 HLK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.96
Transmembrane Helix	10	33	0.89
Non-Cytoplasmic	34	41	0.84
Transmembrane Helix	42	68	0.68
Cytoplasmic	69	79	0.73
Transmembrane Helix	80	102	0.88
Non-Cytoplasmic	103	114	0.90
Transmembrane Helix	115	135	0.89
Cytoplasmic	136	423	0.96