YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAAT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.93
Transmembrane Helix	45	67	0.91
Non-Cytoplasmic	68	77	0.72
Transmembrane Helix	78	97	0.96
Cytoplasmic	98	109	0.80
Transmembrane Helix	110	131	0.90
Non-Cytoplasmic	132	171	0.88
Transmembrane Helix	172	193	0.91
Cytoplasmic	194	200	0.85
Transmembrane Helix	201	223	0.90
Non-Cytoplasmic	224	238	0.90
Transmembrane Helix	239	262	0.83
Cytoplasmic	263	278	0.87
Transmembrane Helix	279	301	0.94
Non-Cytoplasmic	302	322	0.90
Transmembrane Helix	323	345	0.94
Cytoplasmic	346	372	0.94
Transmembrane Helix	373	392	0.92
Non-Cytoplasmic	393	399	0.70
Transmembrane Helix	400	422	0.89
Cytoplasmic	423	493	0.99
Transmembrane Helix	494	515	0.92
Non-Cytoplasmic	516	521	0.86
Transmembrane Helix	522	543	0.94
Cytoplasmic	544	557	0.83
Transmembrane Helix	558	580	0.90
Non-Cytoplasmic	581	585	0.88
Transmembrane Helix	586	606	0.93
Cytoplasmic	607	635	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLVDTQKE GGGHSWGYVR SLVRRKQVDS ANGQSHGHQL ARALTVPHLV AIGVGATIGA  60
   61 GVYILVGTVA REHSGPSLAL SFLIAGIAAG LSAFCYAELS SRCPSAGSAY HYSYICVGEG 120
  121 VAWIIGWALI LEYTIGGSAV ARGISPNLAL IFGGEDGLPA ILARHQIPGL DIVVDPCAAI 180
  181 LVFVVTGLLC MGIKESTFAQ GIVTAVNVCV LLFVIVAGSY LGFKTGWPGY ELPTGFFPFG 240
  241 VDGMFAGSAT VFFAFIGFDS VASTAEEVRN PQRDLPIGIG LALLLCCSLY MMVSIVIVGL 300
  301 IPYYAMDPDT PISSAFASHD MQWAVYLITL GAVMALCSAL MGALLPQPRI LMAMARDGLL 360
  361 PSIFSDINKR TQVPVKATVA TGLCAATLAF FMDVSQLAGM VSVGTLLAFT MVAISVLILR 420
  421 YVPPDEQPLP SSLQERIDSV SFICGETTSS GHVGTSDSSH QPLIVNNDAL VDVPLIKNQE 480
  481 ALGCLVLSEE TRRIVAGWSI MFTCVGAFLL SYAASSLSFP GLIRYPLCGV GGCLLLAGLI 540
  541 ALSSIDQDDA RHTFGHSGGY MCPFVPLLPI ICILINMYLL VNLGSATWAR VSVWLLIGVI 600
  601 VYVFYGRKNS SLANAVYVTT AHAEEIYREH EGSLA