YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CALS5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	485	0.88
Transmembrane Helix	486	505	0.81
Cytoplasmic	506	514	0.71
Transmembrane Helix	515	536	0.80
Non-Cytoplasmic	537	556	0.63
Transmembrane Helix	557	580	0.78
Cytoplasmic	581	600	0.51
Transmembrane Helix	601	624	0.89
Non-Cytoplasmic	625	659	0.47
Transmembrane Helix	660	684	0.80
Cytoplasmic	685	710	0.47
Transmembrane Helix	711	728	0.59
Non-Cytoplasmic	729	734	0.64
Transmembrane Helix	735	755	0.88
Cytoplasmic	756	1484	0.80
Transmembrane Helix	1485	1508	0.90
Non-Cytoplasmic	1509	1536	0.78
Transmembrane Helix	1537	1560	0.67
Cytoplasmic	1561	1570	0.61
Transmembrane Helix	1571	1593	0.69
Non-Cytoplasmic	1594	1628	0.58
Transmembrane Helix	1629	1648	0.63
Cytoplasmic	1649	1654	0.68
Transmembrane Helix	1655	1677	0.90
Non-Cytoplasmic	1678	1766	0.73
Transmembrane Helix	1767	1788	0.92
Cytoplasmic	1789	1803	0.88
Transmembrane Helix	1804	1824	0.93
Non-Cytoplasmic	1825	1830	0.80
Transmembrane Helix	1831	1851	0.87
Cytoplasmic	1852	1870	0.85
Transmembrane Helix	1871	1893	0.91
Non-Cytoplasmic	1894	1923	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQSSTSHDS GPQGLMRRPS RSAATTVSIE VFDHEVVPAS LGTIAPILRV AAEIEHERPR  60
   61 VAYLCRFYAF EKAHRLDPSS GGRGVRQFKT LLFQRLERDN ASSLASRVKK TDGREVESFY 120
  121 QQYYEHYVRA LDQGDQADRA QLGKAYQTAG VLFEVLMAVN KSEKVEAVAP EIIAAARDVQ 180
  181 EKNEIYAPYN ILPLDSAGAS QSVMQLEEVK AAVAALGNTR GLNWPSGFEQ HRKKTGNLDL 240
  241 LDWLRAMFGF QRDNVRNQRE HLVCLFADNH IRLTPKPEPL NKLDDRAVDT VMSKLFKNYK 300
  301 NWCKFLGRKH SLRLPQAAQD IQQRKILYMG LYLLIWGEAA NIRFMPECLC YIFHNMAYEL 360
  361 HGLLAGNVSI VTGENIKPSY GGDDEAFLRK VITPIYRVVQ TEANKNANGK AAHSDWSNYD 420
  421 DLNEYFWTPD CFSLGWPMRD DGDLFKSTRD TTQGKKGSFR KAGRTGKSNF TETRTFWHIY 480
  481 HSFDRLWTFY LLALQAMIIL AFERVELREI LRKDVLYALS SIFITAAFLR FLQSVLDVIL 540
  541 NFPGFHRWKF TDVLRNILKI VVSLAWCVVL PLCYAQSVSF APGKLKQWLS FLPQVKGVPP 600
  601 LYIMAVALYL LPNVLAAIMF IFPMLRRWIE NSDWHIFRLL LWWSQPRIYV GRGMHESQIA 660
  661 LIKYTIFWLL LFCCKFAFSY FLQVKLLVKP TNAIMSIRHV KYKWHEFFPN AEHNYGAVVS 720
  721 LWLPVILVYF MDTQIWYAIF STICGGVIGA FDRLGEIRTL GMLRSRFQSL PGAFNTYLVP 780
  781 SDKTRRRGFS LSKRFAEVTA ARRTEAAKFS QLWNEIISSF REEDLISDRE MDLLLVPYTS 840
  841 DPSLKLIQWP PFLLASKIPI ALDMAAQFRT RDSDLWKRIC ADEYMKCAVI ECYESFKHVL 900
  901 HTLVIGENEK RIIGIIIKEV ESNISKNSFL SNFRMAPLPA LCSKFVELVG ILKNADPAKR 960
  961 DTVVLLLQDM LEVVTRDMMQ NENRELVELG HTNKESGRQL FAGTDAKPAI LFPPVATAQW1020
 1021 HEQISRLHLL LTVKESAMDV PTNLEAQRRI AFFTNSLFMD MPRAPRVRNM LSFSVLTPYY1080
 1081 SEETVYSKND LEMENEDGVS VVYYLQKIFP DEWTNFLERL DCKDETSVLE SEENILQLRH1140
 1141 WVSLRGQTLF RTVRGMMYYR RALKLQAFLD MANETEILAG YKAISEPTEE DKKSQRSLYT1200
 1201 QLEAVADLKF TYVATCQNYG NQKRSGDRRA TDILNLMVNN PSLRVAYIDE VEEREGGKVQ1260
 1261 KVFYSVLIKA VDNLDQEIYR IKLPGPAKIG EGKPENQNHA LIFTRGEALQ AIDMNQDHYL1320
 1321 EEALKMRNLL EEFNEDHGVR APTILGFREH IFTGSVSSLA WFMSNQETSF VTIGQRVLAS1380
 1381 PLKVRFHYGH PDVFDRIFHI TRGGISKASR GINLSEDIFA GFNSTLRRGN VTHHEYIQVG1440
 1441 KGRDVGLNQI SLFEAKVACG NGEQTLSRDL YRLGHRFDFF RMMSCYFTTV GFYISSMIVV1500
 1501 LTVYAFLYGR LYLSLSGVEE AIVKFAAAKG DSSLKAAMAS QSVVQLGLLM TLPMVMEIGL1560
 1561 ERGFRTALSD LIIMQLQLAP VFFTFSLGTK VHYYGRTILH GGSKYRATGR GFVVKHEKFA1620
 1621 ENYRMYSRSH FVKGMELMVL LICYRIYGKA AEDSVGYALV MGSTWFLVGS WLFAPFFFNP1680
 1681 SGFEWQKIVD DWDDWNKWIS SRGGIGVPAN KSWESWWEEE QEHLLHSGFF GKFWEIFLSL1740
 1741 RYFIYQYGIV YQLNLTKESR MGKQHSIIVY GLSWLVIVAV MIVLKIVSMG RKKFSADFQL1800
 1801 MFRLLKLFLF IGSVVIVGML FHFLKLTVGD IMQSLLAFLP TGWALLQISQ VARPLMKTVG1860
 1861 MWGSVKALAR GYEYIMGVVI FMPVTVLAWF PFVSEFQTRL LFNQAFSRGL QIQRILAGGK1920
 1921 KQK