YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BOR1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.51
Transmembrane Helix	33	55	0.78
Non-Cytoplasmic	56	63	0.37
Transmembrane Helix	64	86	0.71
Cytoplasmic	87	89	0.26
Transmembrane Helix	90	110	0.70
Non-Cytoplasmic	111	122	0.52
Transmembrane Helix	123	148	0.83
Cytoplasmic	149	153	0.44
Transmembrane Helix	154	172	0.80
Non-Cytoplasmic	173	195	0.66
Transmembrane Helix	196	216	0.91
Cytoplasmic	217	233	0.58
Transmembrane Helix	234	255	0.83
Non-Cytoplasmic	256	288	0.65
Transmembrane Helix	289	310	0.93
Cytoplasmic	311	330	0.63
Transmembrane Helix	331	353	0.82
Non-Cytoplasmic	354	472	0.50
Transmembrane Helix	473	489	0.56
Cytoplasmic	490	490	0.12
Transmembrane Helix	491	506	0.53
Non-Cytoplasmic	507	551	0.52
Transmembrane Helix	552	580	0.81
Cytoplasmic	581	704	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETFVPFEG IKNDLKGRLM CYKQDWTGGF KAGFRILAPT TYIFFASAIP VISFGEQLER  60
   61 STDGVLTAVQ TLASTAICGM IHSIIGGQPL LILGVAEPTV IMYTFMFNFA KARPELGRDL 120
  121 FLAWSGWVCV WTALMLFVLA ICGACSIINR FTRVAGELFG LLIAMLFMQQ AIKGLVDEFR 180
  181 IPERENQKLK EFLPSWRFAN GMFALVLSFG LLLTGLRSRK ARSWRYGTGW LRSLIADYGV 240
  241 PLMVLVWTGV SYIPAGDVPK GIPRRLFSPN PWSPGAYGNW TVVKEMLDVP IVYIIGAFIP 300
  301 ASMIAVLYYF DHSVASQLAQ QKEFNLRKPS SYHYDLLLLG FLTLMCGLLG VPPSNGVIPQ 360
  361 SPMHTKSLAT LKYQLLRNRL VATARRSIKT NASLGQLYDN MQEAYHHMQT PLVYQQPQGL 420
  421 KELKESTIQA TTFTGNLNAP VDETLFDIEK EIDDLLPVEV KEQRVSNLLQ STMVGGCVAA 480
  481 MPILKMIPTS VLWGYFAFMA IESLPGNQFW ERILLLFTAP SRRFKVLEDY HATFVETVPF 540
  541 KTIAMFTLFQ TTYLLICFGL TWIPIAGVMF PLMIMFLIPV RQYLLPRFFK GAHLQDLDAA 600
  601 EYEEAPALPF NLAAETEIGS TTSYPGDLEI LDEVMTRSRG EFRHTSSPKV TSSSSTPVNN 660
  661 RSLSQVFSPR VSGIRLGQMS PRVVGNSPKP ASCGRSPLNQ SSSN