YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20268740, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMKLLLSQ ARRQGLIKPF SSPFQQIPRL FSSSSSSSSS SSSSSDSNPS PDSNESRKKA  60
   61 VTIEPVSYAA KPKDQKSEPK NVESTENLQS PESANWTREE IRYVKDSPSI NPVSYAQRVA 120
  121 PLPEDRVAGE NEGDRTPEEM ERERKRIELE NRARRRFLRA NAVEEDTSSL PLPTLLKPEL 180
  181 KHGKKPIFDL MEAIREIKGN AKAKFDETLE AHVRLGIEKG RSELIVRGTL ALPHSVKKDV 240
  241 KVAFFAEGAD AEDAKAAGAD VVGGLELIEE ILKSGKIDFD RCLATPKMMP RVYKISRILN 300
  301 NHGLMPNPKQ GSVTKDVTKA VKDAKAGHTK FRMDKTSILH VPLGKMSFSE EALRENVGAF 360
  361 MNALLLAKPA GLKKTSKYAG YVNAFHLCST MGKGYPVSIQ SLSRAADLHT KLQLK

Type	Start	End	Confidence
Signal Peptide	1	45	0.84
N-region	1	36
H-region	37	42
C-region	43	45
Cleavage Site	45	46
Non-Cytoplasmic	46	415	0.99