YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSA_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLLVLIIL YNILNSAHSA PTITAVSNGK FGVPTYITIT GTGFTGTPVV TIGGQTCDPV  60
   61 IVANTASLQC QFSAQLAPGN SNFDVIVKVG GVPSTGGNGL FKYTPPTLST IFPNNGRIGM 120
  121 ILVDGPSNIS GYKLNVNDSI NSAMLSVTAD SVSPTIYFLV PNTIAGGLLN LELIQPFGFS 180
  181 TIVTSKSVFS PTITSITPLA FDLTPTNVTV TGKYFGTTAS VTMGSHIYTG LTVQDDGTNC 240
  241 HVIFTTRSVY ESSNTITAKA STGVDMIYLD NQGNQQPITF TYNPPTITST KQVNDSVEIS 300
  301 TTNTGTDFTQ ISLTMGTSSP TNLVITGTNE KIVITLPHAL PEGEIQFNLK AGISNVVTST 360
  361 LLVTPVINSV TQAPHNGGSI TISGIFLNNA HVSIVVDQNT TDIVCAPDSN GESIICPVEA 420
  421 GSGTINLVVT NYKNFASDPT IKTEATTSTT YTIPDTPTPT DTATPSPTPT ETATPSPTPK 480
  481 PTSTPEETEA PSSATTLISP LSLIVIFISF VLLI

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	492	0.99
Transmembrane Helix	493	513	0.81
Cytoplasmic	514	514	0.85