YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HPT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLLSSSSL VSAAGGFCWK KQNLKLHSLS EIRVLRCDSS KVVAKPKFRN NLVRPDGQGS  60
   61 SLLLYPKHKS RFRVNATAGQ PEAFDSNSKQ KSFRDSLDAF YRFSRPHTVI GTVLSILSVS 120
  121 FLAVEKVSDI SPLLFTGILE AVVAALMMNI YIVGLNQLSD VEIDKVNKPY LPLASGEYSV 180
  181 NTGIAIVASF SIMSFWLGWI VGSWPLFWAL FVSFMLGTAY SINLPLLRWK RFALVAAMCI 240
  241 LAVRAIIVQI AFYLHIQTHV FGRPILFTRP LIFATAFMSF FSVVIALFKD IPDIEGDKIF 300
  301 GIRSFSVTLG QKRVFWTCVT LLQMAYAVAI LVGATSPFIW SKVISVVGHV ILATTLWARA 360
  361 KSVDLSSKTE ITSCYMFIWK LFYAEYLLLP FLK

Type	Start	End	Confidence
Cytoplasmic	1	102	0.82
Transmembrane Helix	103	124	0.78
Non-Cytoplasmic	125	132	0.75
Transmembrane Helix	133	155	0.88
Cytoplasmic	156	177	0.80
Transmembrane Helix	178	199	0.85
Non-Cytoplasmic	200	205	0.68
Transmembrane Helix	206	224	0.94
Cytoplasmic	225	231	0.81
Transmembrane Helix	232	254	0.91
Non-Cytoplasmic	255	269	0.80
Transmembrane Helix	270	288	0.95
Cytoplasmic	289	312	0.86
Transmembrane Helix	313	332	0.94
Non-Cytoplasmic	333	337	0.77
Transmembrane Helix	338	358	0.88
Cytoplasmic	359	393	0.71