YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCN9A_RABIT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	121	0.97
Transmembrane Helix	122	143	0.93
Non-Cytoplasmic	144	189	0.92
Transmembrane Helix	190	210	0.90
Cytoplasmic	211	220	0.77
Transmembrane Helix	221	240	0.89
Non-Cytoplasmic	241	247	0.80
Transmembrane Helix	248	269	0.95
Cytoplasmic	270	375	0.83
Transmembrane Helix	376	402	0.85
Non-Cytoplasmic	403	735	0.59
Transmembrane Helix	736	758	0.87
Cytoplasmic	759	771	0.76
Transmembrane Helix	772	794	0.87
Non-Cytoplasmic	795	810	0.79
Transmembrane Helix	811	834	0.79
Cytoplasmic	835	854	0.81
Transmembrane Helix	855	879	0.86
Non-Cytoplasmic	880	909	0.82
Transmembrane Helix	910	929	0.76
Cytoplasmic	930	940	0.79
Transmembrane Helix	941	964	0.92
Non-Cytoplasmic	965	1193	0.93
Transmembrane Helix	1194	1213	0.86
Cytoplasmic	1214	1228	0.85
Transmembrane Helix	1229	1245	0.88
Non-Cytoplasmic	1246	1259	0.70
Transmembrane Helix	1260	1281	0.81
Cytoplasmic	1282	1305	0.86
Transmembrane Helix	1306	1332	0.89
Non-Cytoplasmic	1333	1430	0.86
Transmembrane Helix	1431	1454	0.92
Cytoplasmic	1455	1507	0.89
Transmembrane Helix	1508	1529	0.73
Non-Cytoplasmic	1530	1542	0.70
Transmembrane Helix	1543	1564	0.91
Cytoplasmic	1565	1572	0.63
Transmembrane Helix	1573	1596	0.83
Non-Cytoplasmic	1597	1637	0.62
Transmembrane Helix	1638	1665	0.76
Cytoplasmic	1666	1679	0.62
Transmembrane Helix	1680	1697	0.63
Non-Cytoplasmic	1698	1732	0.64
Transmembrane Helix	1733	1756	0.86
Cytoplasmic	1757	1984	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMLPPPGPQ SFVRFTKQSL ALIEQRIAEG KTKEPKEEKK DDHDEGPKPS SDLEAGKQLP  60
   61 FIYGDIPAGM VSEPLEDLDP YYADKKTFIV LNKGKAIFRF NATPALYILS PFSPLRRISI 120
  121 KILVHSLFSM LIMCTILTNC IFMTMNNPAE WTKNVEYTFT GIYTFESLVK IFARGFCVGE 180
  181 FTFLRDPWNW LDFIVIVFAY LTEFVNLGNV SALRTFRVLR ALKTISVIPG LKTIVGALIQ 240
  241 SVKKLSDVII LTVFCLSVFA LIGLQLFMGH LKHKCLRKIE NETLESIMSS IESEEDYKKY 300
  301 FYYLEGSKDA LLCGFSTDSG QCPEGYYCVK AGRNPDYGYT SFDTFSWAFL ALFRLMTQDY 360
  361 WENLYQQTLR AAGKTYMIFF VVVIFLGSFY LINLILAVVA MAYEEQNQAN IEEAKQKELE 420
  421 FQQMLDRLKK EQEEAEAIAA AAAEYTSIGR SRIMGLSESS SETSKLSSKS AKERRNRRKK 480
  481 KNQKKLSSGE EKGDDEKLSK SESEESISRK QFHLGVEGHR LAREKRLSAP NQSPLSIRGS 540
  541 LFSARRSSRT SLFSFKGRGK DIGSETEFAD DEHSIFGDNE SRRGSLFVPQ RPQERRSSNL 600
  601 SQASRSPPML QMNGKMHSAV DCNGVVSLVD GPSALMLPNG QLLPEVIIDK ATSDDSGTTQ 660
  661 IRKKRRSSSY LLSEDMLNDP HLRQRAMSRA SILTNTVEEL EESRQKCPSW WYRFAHTFLI 720
  721 WNCSPFWIKF KKFIYIIVMD PFVDLAITIC IVLNTLFMAM EHHPMTEEFK NVLVVGNLVF 780
  781 TGIFAAEMVL KLIAMDPYEY FQVGWNVFDS LIVTLSLVEL FLADVEGLSV LRSFRLLRVF 840
  841 KLAKSWPTLN MLIKIIGNSV GPLGNLTLVL AIIVFIFAVV GMQLFGKSYK ECVCKINDDC 900
  901 SLPRWHMNDF FHSFLIVFRV LCGEWIETMW DCMEVAGQAM CLIVYMMVMV IGNLVVLNLF 960
  961 LALLLSSFSS DNLSAIEEDT DANNLQIAVT RIKKGINYVK QTLRELILKA FSKKPKISKE1020
 1021 IRQAEDLNSK KENYISNRTL AEMSKDYNFH KEKDKISGFG SSMDKYLMEE SDHQSFIHNP1080
 1081 SLTVTVPIAP GESDLENMNT EELSSDSESE YSKERLNRSS SSECSTVDNA LPGEGEEAEA1140
 1141 EPVNSDEPEA CFTDGCVRRF PCCQVSIESG KGKIWWNIRK TCYRIVEHSW FESFIVLMIL1200
 1201 LSSGALAFED IYIEKKKTIK IILEYADKIF TYIFILEMLL KWVAYGYKTY FTNAWCWLDF1260
 1261 LIVDVSLVTL VANTLGYSDL GPIKSLRTLR ALRPLRALSR FEGMRVVVNA LIGAIPSIMN1320
 1321 VLLVCLIFWL IFSIMGVNLF AGKFYQCVNT TDDSRFPTKQ VSNRSECFAL MNGSQNVRWK1380
 1381 NLKVNFDNVG LRYLSLLQVA TFKGWMDIMY AAVDSVNVDQ QPSYEHNLYM YIYFVIFIIF1440
 1441 GSFFTLNLFI GVIIDNFNQQ KKKLGGQDIF MTEEQKKYYN AMKKLGSKKP QKPIPRPGNK1500
 1501 FQGCIFDLVT NQAFDITIMI LICLNMVTMM VEKEGQSDYM TDVLYWINVV FIILFTGECV1560
 1561 LKLISLRHYY FTIGWNIFDF VVVILSIVGM FLAELIETYF VSPTLFRVIR LARIGRILRL1620
 1621 IKGAKGIRTL LFALMMSLPA LFNIGLLLFL VMFIYAIFGM SNFAYVKKEA GINDMFNFET1680
 1681 FGNSMICLFQ ITTSAGWDGL LAPILNSAPP DCDPKKVHPG SSTEGDCGSP SVGIFYFVSY1740
 1741 IIISFLVVVN MYIAVILENF SVATEESTEP LSEDDFEMFY EVWEKFDPDA TQFIEYSKLS1800
 1801 DFAAALDPPL LIAKPNKVQL IAMDLPMVSG DRIHCLDILF AFTKRVLGES GEMDSLRSQM1860
 1861 EERFMSANPS KVSYEPITTT LKRKQEDVSA TVIQRAYRRY RLRQNVKNIS SIYIKEGDKD1920
 1921 DDLPNKGDIV FDNVNSSSPE KTDATASTIS PPSYDSVTKP DKEKYEKDKT EKEDKGKDGK1980
 1981 ETKK