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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCN9A_RABIT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMLPPPGPQ SFVRFTKQSL ALIEQRIAEG KTKEPKEEKK DDHDEGPKPS SDLEAGKQLP  60
   61 FIYGDIPAGM VSEPLEDLDP YYADKKTFIV LNKGKAIFRF NATPALYILS PFSPLRRISI 120
  121 KILVHSLFSM LIMCTILTNC IFMTMNNPAE WTKNVEYTFT GIYTFESLVK IFARGFCVGE 180
  181 FTFLRDPWNW LDFIVIVFAY LTEFVNLGNV SALRTFRVLR ALKTISVIPG LKTIVGALIQ 240
  241 SVKKLSDVII LTVFCLSVFA LIGLQLFMGH LKHKCLRKIE NETLESIMSS IESEEDYKKY 300
  301 FYYLEGSKDA LLCGFSTDSG QCPEGYYCVK AGRNPDYGYT SFDTFSWAFL ALFRLMTQDY 360
  361 WENLYQQTLR AAGKTYMIFF VVVIFLGSFY LINLILAVVA MAYEEQNQAN IEEAKQKELE 420
  421 FQQMLDRLKK EQEEAEAIAA AAAEYTSIGR SRIMGLSESS SETSKLSSKS AKERRNRRKK 480
  481 KNQKKLSSGE EKGDDEKLSK SESEESISRK QFHLGVEGHR LAREKRLSAP NQSPLSIRGS 540
  541 LFSARRSSRT SLFSFKGRGK DIGSETEFAD DEHSIFGDNE SRRGSLFVPQ RPQERRSSNL 600
  601 SQASRSPPML QMNGKMHSAV DCNGVVSLVD GPSALMLPNG QLLPEVIIDK ATSDDSGTTQ 660
  661 IRKKRRSSSY LLSEDMLNDP HLRQRAMSRA SILTNTVEEL EESRQKCPSW WYRFAHTFLI 720
  721 WNCSPFWIKF KKFIYIIVMD PFVDLAITIC IVLNTLFMAM EHHPMTEEFK NVLVVGNLVF 780
  781 TGIFAAEMVL KLIAMDPYEY FQVGWNVFDS LIVTLSLVEL FLADVEGLSV LRSFRLLRVF 840
  841 KLAKSWPTLN MLIKIIGNSV GPLGNLTLVL AIIVFIFAVV GMQLFGKSYK ECVCKINDDC 900
  901 SLPRWHMNDF FHSFLIVFRV LCGEWIETMW DCMEVAGQAM CLIVYMMVMV IGNLVVLNLF 960
  961 LALLLSSFSS DNLSAIEEDT DANNLQIAVT RIKKGINYVK QTLRELILKA FSKKPKISKE1020
 1021 IRQAEDLNSK KENYISNRTL AEMSKDYNFH KEKDKISGFG SSMDKYLMEE SDHQSFIHNP1080
 1081 SLTVTVPIAP GESDLENMNT EELSSDSESE YSKERLNRSS SSECSTVDNA LPGEGEEAEA1140
 1141 EPVNSDEPEA CFTDGCVRRF PCCQVSIESG KGKIWWNIRK TCYRIVEHSW FESFIVLMIL1200
 1201 LSSGALAFED IYIEKKKTIK IILEYADKIF TYIFILEMLL KWVAYGYKTY FTNAWCWLDF1260
 1261 LIVDVSLVTL VANTLGYSDL GPIKSLRTLR ALRPLRALSR FEGMRVVVNA LIGAIPSIMN1320
 1321 VLLVCLIFWL IFSIMGVNLF AGKFYQCVNT TDDSRFPTKQ VSNRSECFAL MNGSQNVRWK1380
 1381 NLKVNFDNVG LRYLSLLQVA TFKGWMDIMY AAVDSVNVDQ QPSYEHNLYM YIYFVIFIIF1440
 1441 GSFFTLNLFI GVIIDNFNQQ KKKLGGQDIF MTEEQKKYYN AMKKLGSKKP QKPIPRPGNK1500
 1501 FQGCIFDLVT NQAFDITIMI LICLNMVTMM VEKEGQSDYM TDVLYWINVV FIILFTGECV1560
 1561 LKLISLRHYY FTIGWNIFDF VVVILSIVGM FLAELIETYF VSPTLFRVIR LARIGRILRL1620
 1621 IKGAKGIRTL LFALMMSLPA LFNIGLLLFL VMFIYAIFGM SNFAYVKKEA GINDMFNFET1680
 1681 FGNSMICLFQ ITTSAGWDGL LAPILNSAPP DCDPKKVHPG SSTEGDCGSP SVGIFYFVSY1740
 1741 IIISFLVVVN MYIAVILENF SVATEESTEP LSEDDFEMFY EVWEKFDPDA TQFIEYSKLS1800
 1801 DFAAALDPPL LIAKPNKVQL IAMDLPMVSG DRIHCLDILF AFTKRVLGES GEMDSLRSQM1860
 1861 EERFMSANPS KVSYEPITTT LKRKQEDVSA TVIQRAYRRY RLRQNVKNIS SIYIKEGDKD1920
 1921 DDLPNKGDIV FDNVNSSSPE KTDATASTIS PPSYDSVTKP DKEKYEKDKT EKEDKGKDGK1980
 1981 ETKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle