YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|485452, gi\|13903
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEGAKLIGA GAAVRTMTEG SSNTSNANGV PIPIPGSTGI YEDHPGLHPA VDERVVEYQA  60
   61 GIREQMSELM RMDGEHPEVV AAAERVHGES DNIAFLQGLL EDLRAHGRES EAFKYGVPND 120
  121 APLPGGGNPA GSSGGVDLAN GNEAGSSAGV DLANVDDAAA AESPLDQFGI HPILDLNIGE 180
  181 YYVSFTNLSL FMLLTLGLVL LLVFVVTKKG GGKLVPNAFQ SLVELIYDFV LNLVNEQIGG 240
  241 LSGNVKHKFF PCILVTFTFL LFCNLQGMIP FSFTVTSHFL ITLALSFSIF IGITIVGFQR 300
  301 HGLHFFSFLL PAGVPLPLAP FLVLLELISY CFRALSLGIR LFANMMAGHS LVKILSGFAW 360
  361 TMLFLNNIFY FLGDLGPLFI VLALTGLELG VAILQAYVFT ILICIYLNDA INLH

Type	Start	End	Confidence
Cytoplasmic	1	182	0.71
Transmembrane Helix	183	207	0.83
Non-Cytoplasmic	208	246	0.71
Transmembrane Helix	247	268	0.86
Cytoplasmic	269	277	0.61
Transmembrane Helix	278	298	0.93
Non-Cytoplasmic	299	307	0.66
Transmembrane Helix	308	332	0.78
Cytoplasmic	333	349	0.60
Transmembrane Helix	350	372	0.79
Non-Cytoplasmic	373	378	0.67
Transmembrane Helix	379	407	0.77
Cytoplasmic	408	414	0.75