YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1173516, gi\|1...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPCKRWFF LSFLQALRSK DFKAFFIIRV NMPVMCFPLP SNSFKTMTDL DYMRRAIALA  60
   61 KQGLGWTNPN PLVGCVIVKN GEIVAEGYHE KIGGWHAERN AVLHCKEDLS GATAYVTLEP 120
  121 CCHHGRTPPC SDLLIERGIK KVFIGSSDPN PLVAGRGANQ LRQAGVEVVE GLLKEECDAL 180
  181 NPIFFHYIQT KRPYVLMKYA MTADGKIATG SGESKWITGE SARARVQQTR HQYSAIMVGV 240
  241 DTVLADNPML NSRMPNAKQP VRIVCDSQLR TPLDCQLVQT AKEYRTVIAT VSDDLQKIEQ 300
  301 FRPLGVDVLV CKARNKRVDL QDLLQKLGEM QIDSLLLEGG SSLNFSALES GIVNRVHCYI 360
  361 APKLVGGKQA KTPIGGEGIQ QIDQAVKLKL KSTELIGEDI LLDYVVISPL

Type	Start	End	Confidence
Signal Peptide	1	19	0.79
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	410	0.99