YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A8_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.40
Transmembrane Helix	16	37	0.73
Cytoplasmic	38	151	0.55
Transmembrane Helix	152	170	0.92
Non-Cytoplasmic	171	177	0.68
Transmembrane Helix	178	199	0.92
Cytoplasmic	200	208	0.82
Transmembrane Helix	209	230	0.85
Non-Cytoplasmic	231	236	0.73
Transmembrane Helix	237	256	0.89
Cytoplasmic	257	325	0.93
Transmembrane Helix	326	345	0.93
Non-Cytoplasmic	346	354	0.81
Transmembrane Helix	355	374	0.91
Cytoplasmic	375	383	0.76
Transmembrane Helix	384	404	0.91
Non-Cytoplasmic	405	412	0.71
Transmembrane Helix	413	433	0.86
Cytoplasmic	434	445	0.70
Transmembrane Helix	446	465	0.69
Non-Cytoplasmic	466	471	0.62
Transmembrane Helix	472	493	0.88
Cytoplasmic	494	537	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFSEILDRV GSMGPFQYLH VTLLALPILG IANHNLLQIF TATTPDHHCR PPPNASLEPW  60
   61 VLPLGPNGKP EKCLRFVHLP NASLPNDTQG ATEPCLDGWI YNSTRDTIVT EWDLVCGSNK 120
  121 LKEMAQSVFM AGILVGGPVF GELSDRFGRK PILTWSYLLL AASGSSAAFS PSLTVYMIFR 180
  181 FLCGCSISGI SLSTIILNVE WVPTSTRAIS STTIGYCYTI GQFILPGLAY AVPQWRWLQL 240
  241 SVSAAFFIFS LLSWWVPESI RWLVLSGKFS KALKTLQRVA TFNGKKEEGE KLTVEELKFN 300
  301 LQKDITSAKV KYGLSDLFRV SILRRVTFCL SLAWFATGFA YYSLAMGVEE FGVNIYILQI 360
  361 IFGGVDIPAK FITILSISYL GRRITQGFLL ILAGVAILAL IFVSSEMQLL RTALAVFGKG 420
  421 CLSGSFSCLF LYTSELYPTV LRQTGMGISN IWARVGSMIA PLVKITGELQ PFIPNVIFGT 480
  481 MTLLGGSAAF FLLETLNRPL PETIEDIQDW YQQTKKTKQE PEAEKASQTI PLKTGGP