YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|854507, gi\|171318
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKTVLLTD SGETMGFFIP QSSLGNLKLY KYQSDDRSFL SNHVLRPFWR KFATIFPLWM  60
   61 APNLVTLLGF CFIIFNVLTT LYYDPYFDQE SPRWTYFSYA IGLFLYQTFD ACDGMHARRT 120
  121 GQQGPLGELF DHCIDSINTT LSMIPVCSMT GMGYTYMTIF SQFAILCSFY LSTWEEYHTH 180
  181 KLYLAEFCGP VEGIIVLCIS FIAVGIYGPQ TIWHTKVAQF SWQDFVFDVE TVHLMYAFCT 240
  241 GALIFNIVTA HTNVVRYYES QSTKSATPSK TAENISKAVN GLLPFFAYFS SIFTLVLIQP 300
  301 SFISLALILS IGFSVAFVVG RMIIAHLTMQ PFPMVNFPFL IPTIQLVLYA FMVYVLDYQK 360
  361 GSIVSALVWM GLGLTLAIHG MFINDIIYDI TTFLDIYALS IKHPKEI

Type	Start	End	Confidence
Cytoplasmic	1	54	0.96
Transmembrane Helix	55	78	0.89
Non-Cytoplasmic	79	151	0.86
Transmembrane Helix	152	174	0.86
Cytoplasmic	175	186	0.79
Transmembrane Helix	187	207	0.86
Non-Cytoplasmic	208	231	0.85
Transmembrane Helix	232	255	0.89
Cytoplasmic	256	275	0.92
Transmembrane Helix	276	298	0.84
Non-Cytoplasmic	299	302	0.76
Transmembrane Helix	303	325	0.90
Cytoplasmic	326	333	0.81
Transmembrane Helix	334	355	0.90
Non-Cytoplasmic	356	362	0.75
Transmembrane Helix	363	383	0.88
Cytoplasmic	384	407	0.81