YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MP05_DICDI
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLITKNNKKK IKKISKRGTN KAFLQKLLSV EKLTNLLKKK QRKVSLARKA QKKIYHKGKF  60
   61 KITDIISIPL RGEVIKRIIK PKLQGIDLVV DEMDHNPIND IEILFYTREQ EEERRQEEPE 120
  121 DYPLDAWDKD VLGIVSEDEP QYKNPTDFIY HWEFGILHPV ASFEEFFEID FNHVALHKVD 180
  181 SYGDFAFYGN DPYVKTFEYP TEQYYISEED AGQFEIDYLL HYSTKLERHS QYLLKRKENY 240
  241 NPKQPQILET DSRSEHYLMN YFYYNKLENV LEKKEGIDDA EVYKFIKLDF GEKMELKLEK 300
  301 FYDLNRERRF RVKKLSQSKL YEFEKAALKG IGFDCFMLIV GIIIFLASSP YLFSQLPWRV 360
  361 KYSLHNTWYH NLLEVIDVLF SMPKVINLEW LYLQAMWEGE LTVLKIRGGI SVLTAIETIM 420
  421 SVMSNYKDLS QTSQIINYLA NFSFDIY

Type	Start	End	Confidence
Cytoplasmic	1	329	0.72
Transmembrane Helix	330	353	0.81
Non-Cytoplasmic	354	447	0.56