YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3242456
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS  60
   61 VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF RQFSQELKAE AVAKAKQLSQ 120
  121 ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL 180
  181 RGLRFISNKQ KNVDGWNDVQ SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR 240
  241 RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN 300
  301 KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN 360
  361 LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG LFLWKFFQYK QKDAFHVMGY 420
  421 CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV 480
  481 ILHIGDHLAC DFPRIVRATE YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS 540
  541 FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT 600
  601 WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV 660
  661 QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR VFSEVCEPPV GGKSGLLRAD 720
  721 ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD 780
  781 SISDFSRSSE YSTGSNGDTP RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG 840
  841 VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS 900
  901 SKHCNARTGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle