YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|171567\|gb\|AAA...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSHSEEVI VPEFNSSAKE LPRPLAEKCP SIIKKFISAY DAKPDFVARS PGRVNLIGEH  60
   61 IDYCDFSVLP LAIDFDMLCA VKVLNEKNPS ITLINADPKF AQRKFDLPLD GSYVTIDPSV 120
  121 SDWSNYFKCG LHVAHSFLKK LAPERFASAP LAGLQVFCEG DIPTGSGLSS SAAFICAVAL 180
  181 AVVKANMGPG YHMSKQNLMR ITVVADIMLV LTMAVWIRLP LFAVRKIMLY TLSSNAVEAT 240
  241 PFKFPQLKNH EISFVIANTL VVSNKFETAP TNYNLRVVEV TTAANVLAAT YGVVLPSGKE 300
  301 GSSTNKGNLR DFMNVYYARY HNISTPWNGD IESGIERLTK MLVLVEESLA NKKQGFSVDD 360
  361 VAQSLNCSRE EFTRDYLTTS PVRFQVLKLY QRAKHVYSES LRVLKAVKLM TTASFTADED 420
  421 FFKQFGVLMN ESQASCDKLY ECSCPEIDKI CSIALSNGSY GSRLTGAGWG GCTVHLVPGG 480
  481 PNNGNIEKVK EALANEFYKV KYPKITDAEL ENAIIVSKPA LGSCLYEL

Type	Start	End	Confidence
Cytoplasmic	1	157	0.56
Transmembrane Helix	158	172	0.41
Non-Cytoplasmic	173	173	0.08
Transmembrane Helix	174	188	0.67
Cytoplasmic	189	197	0.52
Transmembrane Helix	198	222	0.78
Non-Cytoplasmic	223	528	0.64