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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|99840
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGARNIYHH SYMSFLLVFV VMILIHPALS IYINTLSSTE SLTISSNKTL VSPGSIFEVG  60
   61 FFRTNSRWYL GMWYKKVSDR TYVWVANRDN PLSNAIGTLK ISGNNLVLLD HSNKPVWWTN 120
  121 LTRGNERSPV VAELLANGNF VMRDSSNNDA SEYLWQSFDY PTDTLLPEMK LGYNLKTGLN 180
  181 RFLTSWRSSD DPSSGNFSYK LETQSLPEFY LSRENFPMHR SGPWNGIRFS GIPEDQKLSY 240
  241 MVYNFIENNE EVAYTFRMTN NSFYSRLTLI SEGYFQRLTW YPSIRIWNRF WSSPVDPQCD 300
  301 TYIMCGPYAY CDVNTSPVCN CIQGFNPRNI QQWDQRVWAG GCIRRTQLSC SGDGFTRMKK 360
  361 MKLPETTMAT VDRSIGVKEC KKRCISDCNC TAFANADIRN GGSGCVIWTE RLEDIRNYAT 420
  421 DAIDGQDLYV RLAAADIAKK RNASGKIISL TVGVSVLLLL IMFCLWKRKQ KRAKASAISI 480
  481 ANTQRNQNLP MNEMVLSSKR EFSGEYKFEE LELPLIEMET VVKATENFSS CNKLGQGGFG 540
  541 IVYKGRLLDG KEIAVKRLSK TSVQGTDEFM NEVTLIARLQ HINLVQVLGC CIEGDEKMLI 600
  601 YEYLENLSLD SYLFGKTRRS KLNWNERFDI TNGVARGLLY LHQDSRFRII HRDLKVSNIL 660
  661 LDKNMIPKIS DFGMARIFER DETEANTMKV VGTYGYMSPE YAMYGIFSEK SDVFSFGVIV 720
  721 LEIVSGKKNR GFYNLDYEND LLSYVWSRWK EGRALEIVDP VIVDSLSSQP SIFQPQEVLK 780
  781 CIQIGLLCVQ ELAEHRPAMS SVVWMFGSEA TEIPQPKPPG YCVRRSPYEL DPSSSWQCDE 840
  841 NESWTVNQYT CSVIDAR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle