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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50978984, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEGGRKGS AEKNFWKMGK KSKKEKKEKK PTVSTFAMFR YSNWLDRLYM LVGTMAAIIH  60
   61 GAALPLMMLV FGNMTDSFAN AGISRNKTFP VIINESITNN TQHFINHLEE EMTTYAYYYS 120
  121 GIGAGVLVAA YIQVSFWCLA AGRQILKIRK QFFHAIMRQE IGWFDVHDVG ELNTRLTDDV 180
  181 SKINEGIGDK VGMFFQSIAT FFTGFIVGFT PGWKLTLVIL AISPVLGLSA AIWAKILSSF 240
  241 TDKELLAYAK AGAVAEEVLA AIRTVIAFGG QKKELERYNK NLEEAKRIGI KKAITANISI 300
  301 GAAFLLIYAS YALAFWYGTS LVLSSEYTIG QVLTVFFSVL IGAFSIGQAS PSIEAFANAR 360
  361 GAAYEIFKII DNKPSIDSYS KSGHKPDNIK GNLEFKNVHF SYPSRKEVKI LKGLNLKVQS 420
  421 GQTVALVGNS GCGKSTTVQL MQRLYDPTDG MVCIDGQDIR TINVRHLREI TGVVSQEPVL 480
  481 FATTIAENIR YGRENVTMDE IEKAVKEANA YDFIMKLPNK FDTLVGERGA RLSGGQKQRI 540
  541 AIARALVRNP KILLLDEATS ALDTESEAVV QVALDKARKG RTTIVIAHRL STVRNADVIA 600
  601 GFDDGVIVEK GNHDELMKEK GIYFKLVTMQ TRGNEIELEN ATGESKSESD ALEMSPKDSG 660
  661 SSLIKRRSTR RSIHAPQGQD RKLGTKEDLN ENVPSVSFWR ILKLNSTEWP YFVVGIFCAI 720
  721 INGGLQPAFS IIFSRIIGIF TRDEDPETKR QNSNMFSVLF LVLGIISFIT FFLQGFTFGK 780
  781 AGEILTKRLR YMVFRSMLRQ DVSWFDDPKN TTGALTTRLA NDAAQVKGAI GSRLAVITQN 840
  841 IANLGTGIII SLIYGWQLTL LLLAIVPIIA IAGVVEMKML SGQALKDKKE LEGAGKIATE 900
  901 AIENFRTVVS LTREQKFEYM YAQSLQVPYR NSLRKAHIFG VSFSITQAMM YFSYAGCFRF 960
  961 GAYLVANEFM NFQDVLLVFS AIVFGAMAVG QVSSFAPDYA KAKVSAAHVI MIIEKSPLID1020
 1021 SYSPHGLKPN TLEGNVTFNE VVFNYPTRPD IPVLQGLSLE VKKGQTLALV GSSGCGKSTV1080
 1081 VQLLERFYDP LAGSVLIDGK EIKHLNVQWL RAHLGIVSQE PILFDCSIAE NIAYGDNSRV1140
 1141 VSHEEIMQAA KEANIHHFIE TLPEKYNTRV GDKGTQLSGG QKQRIAIARA LVRQPHILLL1200
 1201 DEATSALDTE SEKVVQEALD KAREGRTCIV IAHRLSTIQN ADLIVVFQNG KVKEHGTHQQ1260
 1261 LLAQKGIYFS MISVQAGAKR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle