YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46136533, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	329	0.56
Transmembrane Helix	330	348	0.73
Cytoplasmic	349	401	0.73
Transmembrane Helix	402	422	0.56
Non-Cytoplasmic	423	433	0.66
Transmembrane Helix	434	455	0.77
Cytoplasmic	456	498	0.44
Transmembrane Helix	499	522	0.86
Non-Cytoplasmic	523	533	0.51
Transmembrane Helix	534	556	0.86
Cytoplasmic	557	565	0.50
Transmembrane Helix	566	592	0.82
Non-Cytoplasmic	593	644	0.70
Transmembrane Helix	645	666	0.73
Cytoplasmic	667	739	0.98
Transmembrane Helix	740	758	0.97
Non-Cytoplasmic	759	766	0.69
Transmembrane Helix	767	788	0.91
Cytoplasmic	789	796	0.79
Transmembrane Helix	797	815	0.86
Non-Cytoplasmic	816	849	0.79
Transmembrane Helix	850	873	0.88
Cytoplasmic	874	883	0.70
Transmembrane Helix	884	906	0.66
Non-Cytoplasmic	907	916	0.78
Transmembrane Helix	917	938	0.90
Cytoplasmic	939	951	0.77
Transmembrane Helix	952	980	0.73
Non-Cytoplasmic	981	999	0.74
Transmembrane Helix	1000	1020	0.93
Cytoplasmic	1021	1060	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRTTNSSS ASFSSSSKQS LSRKSSASSS LAERVGDRVV DDYPTLRQDV ALQPLTSSSS  60
   61 SSTTRSTVTV SPSHPVQDQG HVLLYQAPAS DILPLPLLTT TATPAASASA SVSAPQPVLV 120
  121 DYQNAAPPSP EHTNTDDSLD ATPQPSNADL DMASKKTPFL RSAARSDAAP YGSVSLTPSR 180
  181 NNSPAGSDRW DPDSHQLRHV TDTMRSETSH RSGLSKKSSS RLSEEIDGAV LVSGLEGRMG 240
  241 LGEPTHPGVL EGSLKDDLSE DGALLDDDSS ATSNTEYQEN SPHEAVRASV PPTDNTTLSI 300
  301 NTPRMWCLSV LFAILGSSTN LFFSLRYPSV AITPVIALLL VHPLGHLWDF VLKRPYDPEE 360
  361 DFVDGVRVPL VSDDAHSLHK VKKRTRVRRW LAQGRWNEKE HTCVYVSSNV AFGFAFATDV 420
  421 IVEQTQFYNQ EAPIVYQLLL TISTQILGYG FAGLTRRFLV RPSGMIWPGT LMSAAMFSTL 480
  481 HKQENKPAGG WTISRWKFFY IVWTVSFLFY FLPGLLMPAL SYFNVITWFA PKNVVIANLF 540
  541 GVSSGLGLFP LTFDWAQVTY VGSPLLVPFW AAMNVIGGLA VVMWIIAPIF YYTNVLFSSY 600
  601 MPILSAAVFD NTGKVYDVSK ILTPEFLFDR EAYQNYSRVF LPITYVLSYG VQFAGLSALL 660
  661 THTACWHGQD IWKSWKRALQ EAREDGQAKY EPVADSPGSL PRQSTDESGR RMSSVSHVDG 720
  721 IISREDIHSK LMKRYKDAPL SWYLITFLTM TAIGIFVVEY YPVHLPWYGL LLALAIGALF 780
  781 FIPNGIIMAV TNQHSSIYLI CQLICGVVFP GRPIANMVFV TYGYISSAQG IKFASDLKLG 840
  841 HYMKIPPRIL FLVQIVATLV SSLTQIGVLN WMFANIRGIC TSEAINGFTC PIARVHFNGS 900
  901 ILWGVVGPNE FFGPKAIYRS LVWFFPLGAL LPIPLWLYSR RHRSSILRKV NLPVIFGAMS 960
  961 WIPPATGLNF SVWVLVCYVF NYLIKNRHNA WWSKYTMTLS AALDSGLAFG IVVVFFGFIY1020
 1021 PGFAQNLKWW GTEVYKQGCD WQACSYNTLQ EGEHFGPKTW