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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46125015, gi|...
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAREAEEL KQQGVVEAAA DPQSNVTADD AQKSIVQASR NAGVAAFTFD PDASPEQKKA  60
   61 QAKAAIPREL QQSRRPKGAA IITDVDDGTG PTEDLPEASK EGVLDVARDE QGKPLADGAD 120
  121 PESEEVPYSR TGWAPQLGWP EDDATAQDSL LDHATWVESQ LPDTLYGDWY HNTGVIIFAC 180
  181 VTSWLVAVFG GGLGWVLIVM CFCSTYYRTS LRRVRRNFRD DISREMALKR LENDNESLEW 240
  241 INSFMVKFWP IYQPVLAQTI INSVDQVLSS ATPAFLDSLK LKTFTLGSKP PRMEHVKTYP 300
  301 KTEDDVVMMD WKFSFTPNDT DDMTSRQLKN KINPKVVLEI RIGKAMISKG LDVIVEDMAF 360
  361 SGIMRLKIKL QIPFPHIDRI EMCFLERPTI DYVCKPLGGD NFGFDINFIP GLEGFILEQI 420
  421 HGNLAPMMYA PKVFPIEVAK MLAGSPVDQA IGVVAVTLHG AHGLKNSDNF GGTVDPYASL 480
  481 SLSRRQELAR TKVVPDNPNP RWNETHYIII TSFSDTLDIQ IFDHNDFRKS KELGVATFQL 540
  541 ESIEELNVHE NQRLEVISDG KARGIVSCDV RFFPVLETVK NAEGQDEPPP PSNQGILRFT 600
  601 VEQAKDLDGT KSLVGSLNPY AVMFLNGKEV HQTKKLKRTN NPIWDNGSKE ILITDRKKAK 660
  661 LGLTVKDDRD LAGDQVLGKY QIKLDEMLEC MEQGKEWYNL HGAHTGRVKM MAQWRPVAIS 720
  721 GVASTGGYVT PIGVMRLHFK KATDLRNFEA FGKSDPYTRI LLSGIEKART VTFRNDLNPE 780
  781 WDEVLYVPIH SARDRLALEV MDTEKVGKDR SLGMIELFAA DYVAQDETGE YLVHDRKQLR 840
  841 EDGLRLHGKG IAKGILHYTV AFYPCLNVAD PEDEEEEEKE NEKENEKERE AEKDKDSSSG 900
  901 EEQSPTPQRS AEAGKFNASL DKPKENHLEP PTPTTVGRPS IEMPKGPRKV RLSPEELLKY 960
  961 ESGLLIFRLM EAEMPESHSH LEVLVDDMAY PSYISSTARS KHHKFEEIGD CFIRELDFSR1020
 1021 LTLRARKKGD DDDDLLASLA GNTLETLKQC LNNPTTLKLK GEDGRPASVK VSLKYIPVRM1080
 1081 QLDPSESINN MGTLRVDVLD AAELPSADRN GKSDPYCKFE LNGQEIHKTK VQKKTLNPTW1140
 1141 NEYFEVNVPS RTSAQFKLTV WDYDFADKPD FLGAADINLE SLDPFRPSET RYILDGKSGS1200
 1201 VRIRLLFRPA YVQRARQGTS TFGGTFSSAP GRIVTGVAGA PIKGGAAVAG VVGHGVGRGA1260
 1261 SFLRRGIFNK KDNNNNDVIE EDSETVEPQG LSPNGSAGAN GGLRRSPAIN EDGSSNGSRP1320
 1321 PTSNGHVRSK SIGQSSVHSA NPGAAPSGTA SFTVVDASGF PPASDLYIVI TQLNPKEKTV1380
 1381 GKTKHFKSNS GQWTFGETFK VPCSPDTQFK IEAKGQHTFS SDDDLGEHIY FVDESGSSIA1440
 1441 KELSVGSGTV TLKSSFQSNE TNLVPDSPKA HMRRSFMSKR DGRTSREVTP NP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle