YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42552670, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.91
Transmembrane Helix	49	70	0.77
Non-Cytoplasmic	71	75	0.70
Transmembrane Helix	76	98	0.84
Cytoplasmic	99	115	0.60
Transmembrane Helix	116	143	0.67
Non-Cytoplasmic	144	172	0.72
Transmembrane Helix	173	194	0.91
Cytoplasmic	195	201	0.74
Transmembrane Helix	202	224	0.83
Non-Cytoplasmic	225	244	0.74
Transmembrane Helix	245	263	0.80
Cytoplasmic	264	280	0.79
Transmembrane Helix	281	303	0.88
Non-Cytoplasmic	304	329	0.90
Transmembrane Helix	330	351	0.85
Cytoplasmic	352	370	0.81
Transmembrane Helix	371	389	0.96
Non-Cytoplasmic	390	397	0.88
Transmembrane Helix	398	420	0.91
Cytoplasmic	421	448	0.89
Transmembrane Helix	449	470	0.83
Non-Cytoplasmic	471	480	0.75
Transmembrane Helix	481	500	0.89
Cytoplasmic	501	552	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METRSRFKTF ADKVAVESEP GLTSTQLMLT NHDLKPVEKE RRQWGPWNFV GFWIADSFNI  60
   61 NTWMISSAMI VNGLSWWQAW LCVWIGYSIT GIFVAINARP GAVYHISFPV INRSSFGIWG 120
  121 ALWPVLNRAA MACVWYGVQA YIGGNCVYLM IRSIWKSWEN VPNSFSKDAG TDTAHFASFI 180
  181 IFWICSLPAL WFPVHQLRHL FTAKAYVVPV AGITFLAWTI SRAGGIGPII KQPNTVHGGD 240
  241 LAWEIVKGIM SSISNFATLI VNASDFSRFA QKPKDALWSQ LITIPFGFAI TSFIGIIVSS 300
  301 ASTTLYGKAI WNPLDLLDEF INDGNSAERF GVFFIASSFT LAQLGTNLAA NSVSAGNDLT 360
  361 ALLPRWINIR RGSYICACLG LVICPWQLLK DSNQFTTYLS AYSVFLSSIA GVMICDYYIV 420
  421 RKGYLDAKEL YDARKEGPYY YTAGFNWRGY AAYICGIVIN VVGFADAVGA KNVPIGAVHV 480
  481 YQLNYFCGFG VSMLVYYALC KLSPVPATSD RWMEVGDEID DLRLAYNSRS PSYDEENATG 540
  541 EPSKAAEDTK QF