YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46138449, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARQPARRL AAHLASPSVR FSRTQSASTR RWLSSSAGPK ASRSSYSNYS PLWLTAVALG  60
   61 VAAPLAYKMS DIEPINADPS TLADRDAQKK RESGVNEDSP MRLRMEKFIR EQQAQIVAEL 120
  121 ERLDGKKFRK DEWERPNGGG GTTCVLQEGN VFEKAGLGVS VVYGSLPKPA IEKMRANHKT 180
  181 MDPNMESIDF FAAGLSMVLH PYNPMAPTVH LNYRYFETAN PDGTSQAWWF GGGCDLTPSY 240
  241 LFDEDAIHFH KTIKTACDAH DKEYYPRFKK WCDEYFFNKH RGEARGIGGI FFDDLDETER 300
  301 DRENTFSFVQ DCLKAFLPSY IPIIEKRKDM PYTEAEKDWQ QLRRGKYVEF NLVHDRGTAF 360
  361 GLNTPGSRVE SILMSLPLTA GWKYMHEPEP KSREQRLVDV LRDPKEWV

Type	Start	End	Confidence
Signal Peptide	1	26	0.86
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	408	0.95