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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42547631, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSEDLSLP GDVGLDNGDD PINDAPAIAG ADADVMDDGS LDDSDGPDRH LTPVPIGNGS  60
   61 VGNRYREIMQ QQHQDSSDVS SLGGSSLHGL PKRAGSPIDS VLSGPDDTPS IQGSFVSSPG 120
  121 SSVLPSVASR PGLSSPSPSF RPFDRRFQSR ISSSNINTPR SSSPAFPFLS SHSRNVSLSS 180
  181 QFLLDQADLE TPTPPWEVVR WTKLRKLNGH AFSEAGKRNF GSPTCLAVSA TIVLGTSKGI 240
  241 ILVFDYNQNL KMIIGPGTKA VESGPITAIA ISADHTTIAG GHASGNIFTW DTSRASRPFL 300
  301 TIPHLEPAQL QNRTMDGHVP DVAIVHLGFL GTRHTALVSA DNRGMAFSHL ATRGTGALGR 360
  361 TVKTHRILGR YPDAPLPTGK TVKPSTVLAF APLPLGNVEC STDTLGLTAM LTPYLLVIVS 420
  421 TTPVAQTQHK SARPKDVPPH SAMTGCLAWF PAVKLKVPDP HTGSDISKVK LAYCWSNILT 480
  481 VLDVDEYPRE DNDQPPSYRF KARNRWKCEE AIVAVQWLSR SVLAVLTISQ RMIVLEDRSM 540
  541 RMTEGFDLVQ KYIYHTDLFS EQLHTLVEQL DENDSSMHGV VADAFYMSFK AYKGRIFLLG 600
  601 FNEVSIGALS NWADRLIAMM ENGDYLGAIQ LATSYYTGDA DKLTVGLPED SSLRHTMVRD 660
  661 KIMEIISASL KYAFGQREKE PESYDDDHMK QLADTCFTAC QAVGNQDFLF DEMYEWYEDA 720
  721 DIAGIFLECL EPYILEKTIT MVPPSIVKDL IQHYVSRGWE SRLEEMICHM ETATLDLDQT 780
  781 TLLCKQHSLY DALIYVWNQG IGDYITPMID LLSLLIPLMV DGDFTANNPA DDFFSINAFK 840
  841 IFPYLSYTLT GRVYPNDQTM SEEMATRAKS EIYWFFFSGR TITWPKGSRN EFRTIPNSDS 900
  901 QPSFPYLRMI LKLDAPSFLS ALNEAFEDSF LNDSNDHQMN GNSKGDLPEE QIFGQTINRQ 960
  961 YVLSILLDVM NPNDFAPEDT IYLDMFIARN LPKFPQYLLF SGTTLSRVLT GLCNYPGQDL1020
 1021 AEDAQLSAEY LLSIYHPSDM PDLMPLFKNA GFYRILKRIY KTDKQYDNLV QTYFEDPEDQ1080
 1081 ELVFDCLREC LRPQSELTGR QTQEVLKVVR EHARDLLELE PTLAAKTLAE QDVMLHQHVV1140
 1141 DSAQDAPDLQ HTYLKTLFEP EEHTAGTGLT SARDLVEQYV QLMCKFEPSH VSDYVGIVQS1200
 1201 TDLRLEKLLP TMEDTGVIDA AVVLMAREGQ VKDAMDRLVK HLKTLESAMH GLLTGAEERI1260
 1261 SGPSLGYAAE ELFEGLQKYV HVGIWLCQGQ TKSSSKKSKV VQKGSKSAVE TLSSDEALWL1320
 1321 SLIEACVQIT KALSPALNSA AEQNTSDDEF DEEKLVALLR SLVQHTFTAL LTTTSSQTTS1380
 1381 QPGSKLLSNA GANLSFLRIL RAFLTQAAAS SPNLADLRGV LASIFSAYAY EESILKLSNR1440
 1441 LLERSLFVDV NQSVELRQRG WRPRGSTCEA CSRRVWGPGV AGTSVFEAWE DKQAIEEKRR1500
 1501 KERQADAAER AKGDDGETDL KAKGKGVDTR PSSMLIEANA TSGVSSNKDK PMGPLVVLAC1560
 1561 RHIYHQSCLD ELQERQQNGG VIGVEREYRC PIDGINIQGK PIAFNMSFSS DEEDEILSDA1620
 1621 QSEGSSEEDS PPRQLSQNLF APPFYGRPPT PLPPSPSLTS LLRPSRPTTP DASDDDAIAP1680
 1681 VPRAAPKVPT YEYYGFVLYL FSSLTFLIYL LWGYLPSPFL HALGIEYYPN RWWALAIPAF1740
 1741 IVMTVVYIYV ALAAYNTEML TVPLSSVETV VDGAGKLAEI DAKGRLKGSR NRERKVQADG1800
 1801 RLRWREIWSE GTDAVMDIPL AGVCEVLYGE GRDEEGYVDD D

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