YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42547150, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTDQVPPE AAQSPSSDYA ASSYGYASSD ALMYSTTVTP MHRWALNASD SQFNAIAGAV  60
   61 GGFTSGVVTC PLDVIKTKLQ AQGGYAALNK GRHVGHPKLY NGLLGSGKVI WREEGIRGLY 120
  121 RGLGPIVMGY LPTWAVWFTV YNKSKGYISQ HYDNSHIVNF WSSIIAGASS TIVTNPIWVI 180
  181 KTRLMSQSNI RHNTQDHHAA YYPKATSTPT TRPTLHDWHY KSTLDAARKM YTSEGLISFY 240
  241 SGLTPALLGL THVAVQFPTY EYLKTRFTGQ GMGESSEQDS KNHVFGILGA SILSKILAST 300
  301 ATYPHEVIRT RLQTQRRPLA GEEFAQGMGV TGTGPRGARA PAEKPRYQGV VHTFRVILAE 360
  361 EGWRAFYAGL GTNMMRAVPA ATVTMLTYEY VMKQLYHTRA EARHLLLDPT AES

Type	Start	End	Confidence
Cytoplasmic	1	117	0.86
Transmembrane Helix	118	138	0.92
Non-Cytoplasmic	139	156	0.91
Transmembrane Helix	157	179	0.90
Cytoplasmic	180	235	0.95
Transmembrane Helix	236	255	0.75
Non-Cytoplasmic	256	284	0.74
Transmembrane Helix	285	303	0.41
Cytoplasmic	304	413	0.51