YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42545479, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDFTAEMFA TGRGSDSAED SRRRRGHGDD DDKTPATGAD SNSPSNLPSG SDTPPQKTGL  60
   61 RGGFAAIRQK ANIQDRLVEK LLQQVIPTND DDQNDVHFVG DEQTATQTER PNFNITTMSF 120
  121 NFRRFNARIG VVFKFQARVE RILSWKQASH TLSLLAVYSF VCLDPYLIFV LPIAILLLGV 180
  181 FIPSFMARHP APPKGTLSSE QNVGYSPQGP PLAPAATVKP VKELSKDFFR NMRDLQNCMD 240
  241 DFSRGHDQVV ALMVPVTNFS DEALSSTLFL FLTVGGIAMT VSAHLLPWRI IFLVGGWAIV 300
  301 GMGHPHVARL VTAAHREHLQ PQEAKAQSWL ENWTSSDIIL DTSPETREVE IFELHRPTSG 360
  361 GGEWEPWLFC PSPYDPLSQP RIAGERPRGS RFFEDVMPPE AWEWSEKKWA LDLWSREWVE 420
  421 ERIITGVEVE TEGERWVYDI WDERDERTGV VDLPVNDKGK QKATPRPSWE ENEDGNGRRG 480
  481 NWRRRRWVRL VKRKTIPLQP N

Type	Start	End	Confidence
Cytoplasmic	1	142	0.86
Transmembrane Helix	143	162	0.58
Non-Cytoplasmic	163	165	0.49
Transmembrane Helix	166	187	0.83
Cytoplasmic	188	262	0.62
Transmembrane Helix	263	286	0.78
Non-Cytoplasmic	287	289	0.41
Transmembrane Helix	290	308	0.81
Cytoplasmic	309	501	0.63