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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11066040
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIYSPDMSE VAGGRSSSPS TQLSAVPSLD GLPAAEEHIP DTHTEDERSP GLLGLAVPCC  60
   61 VCLEAERLRG CLNSEKICIV PILACLVSLC LCIAGLKWVF VDKIFEYDSP THLDPGGLGQ 120
  121 DPVISLDPTA APAILVSSEA YTSPVSKAQS EAGAHVTVQG DHAAVASEPS AVPTRKNRLS 180
  181 AFPPFHPTAP PFPSPARTPE VRTPKSGTQP QTTETNLQTA PKLSTSTSTT GTSHLIKCAE 240
  241 KEKTFCVNGG ECFTVKDLSN PSRYLCKCQP GFTGARCTEN VPMKVQTQEK AEELYQKRVL 300
  301 TITGICIALL VVGIMCVVAY CKTKKQRQKL HDRLRQSLRS ERSNLVNIAN GPHHPNPPPE 360
  361 NVQLVNQYVS KNVISSEHIV EREVETSFST SHYTSTAHHS TTVTQTPSHS WSNGHTESVI 420
  421 SESNSVIMMS SVENSRHSSP AGGPRGRLHG LGGPRDNSFL RHARETPDSY RDSPHSERYV 480
  481 SAMTTPARMS PVDFHTPSSP KSPPSEMSPP VSSMTVSMPS VAVSPFVEEE RPLLLVTPPR 540
  541 LREKKYDHHP QQLNSFHHNP AHQSTSLPPS PLRIVEDEEY ETTQEYESVQ EPVKKVTNSR 600
  601 RAKRTKPNGH IANRLEMDSN TSSVSSNSES ETEDERVGED TPFLGIQNPL AASLEVAPAF 660
  661 RLAESRTNPA GRFSTQEELQ ARLSSVIANQ DPIAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle