YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20531742
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	268	0.99
Transmembrane Helix	269	291	0.93
Cytoplasmic	292	350	0.95
Transmembrane Helix	351	371	0.88
Non-Cytoplasmic	372	620	0.98
Transmembrane Helix	621	642	0.90
Cytoplasmic	643	653	0.89
Transmembrane Helix	654	677	0.90
Non-Cytoplasmic	678	683	0.76
Transmembrane Helix	684	706	0.90
Cytoplasmic	707	726	0.92
Transmembrane Helix	727	751	0.81
Non-Cytoplasmic	752	761	0.74
Transmembrane Helix	762	785	0.89
Cytoplasmic	786	832	0.96
Transmembrane Helix	833	853	0.85
Non-Cytoplasmic	854	1095	0.90
Transmembrane Helix	1096	1116	0.89
Cytoplasmic	1117	1122	0.68
Transmembrane Helix	1123	1145	0.88
Non-Cytoplasmic	1146	1151	0.70
Transmembrane Helix	1152	1172	0.88
Cytoplasmic	1173	1189	0.84
Transmembrane Helix	1190	1214	0.84
Non-Cytoplasmic	1215	1225	0.78
Transmembrane Helix	1226	1249	0.88
Cytoplasmic	1250	1276	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARGPALGL LLLLLCPAQV LAQSCIWYGE CGIASGDKRY NCKYSGPPKP LPKDGYDLVQ  60
   61 ELCPGFFFDN VSLCCDVQQL QTLKDNLQLP LQFLSRCPSC FYNLVNLFCE LTCSPRQSQF 120
  121 LNVTATEDYV DPVTNQTKTN VKELQYYIGE SFANAMYNAC RDVEAPSSND KALGLLCGKD 180
  181 AEACNATNWI EYMFSKDNGQ APFTITPIFS DLPTHGMEPM NNATKGCDES VDEVTGPCSC 240
  241 QDCSIVCGPK PQPPPPPVPW RILGLDAMYV IMWITYMAFL LVFFGAFFAL WCYRKRYFVS 300
  301 EYTPIDSNIA FSVNANDRGE ASCCDALGAA FEGCLRRLFS QWGSFCVRNP GPIIFFSLAF 360
  361 IAACSSGLVF VRVTTNPVDL WSAPSSQARL EKEYFDTHFG PFFRTEQLII QAPHTSAHTY 420
  421 QPYPSGSDVP FGPPLDLAIL HQVLDLQTAI ENITASYNNE TVTLQDICVA PLSPYNKNCT 480
  481 ILSVLNYFQN SHSMLDHEIG DDFFVYADYH THLLYCVRAP ASLNDTSLLH DPCLGTFGGP 540
  541 VFPWLVLGGY DDQNYNNATA LVITFPVNNY YNDTERLQKA HVWEKEFINF VKNYKNPNLT 600
  601 ISFTTERSIE DELNRESNGD IFTVIISYAI MFLYISIALG HIKSCSRLLV DSKISLGIAG 660
  661 ILIVLSSVAC SLGIFSYVGI PLTLIVIEVI PFLVLAVGVD NIFILVQTYQ RDERLHGETL 720
  721 DQQLGRVLGE VAPSMFLSSF SEAVAFFLGA LSKMPAVHTF SLFAGMAVLI DFLLQITCFV 780
  781 SLLGLDIKRQ EKNRLDVLCC VRGSEDGTSV QASESCLFRL FKHSYSPLLL KDWMRPIVIA 840
  841 IFVGVLSFSV AVLNKVEIGL DQSLSMPDDS YVMDYFKSLK YLHAGPPVYF VLEEGHDYTS 900
  901 LKGQNMVCGG MGCNNDSLVQ QIFNAAQLDS YTRIGFAPSS WIDDYFDWVK PQSSCCRVYN 960
  961 STDRFCNASV VDPACIRCRP LTQEGKQRPQ GGDFMRFLPM FLSDNPNPKC GKGGHAAYSS1020
 1021 AVNILGNDTG VGATYFMTYH TVLQTSADFT DAMRKANLIA SNITKTMGLE GSNYRVFPYS1080
 1081 VFYVFYEQYL TIIDDTIFNL SVSLGAIFLV TVILLGCDLW SAVIMCITIA MILVNMFGVM1140
 1141 WLWGISLNAV SLVNLVMSCG ISVEFCSHIT RAFTVSMKGS RAQRAEEALA HMGSSVFSGI1200
 1201 TLTKFGGIVV LAFAKSQIFQ IFYFRMYLAM VLLGATHGLI FLPVLLSYIG PSINKAKSLA1260
 1261 TQEQYKGTER EQLLNF