YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LYM3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNPEKPLLL FLILASSLAS MATAKSTIEP CSSKDTCNSL LGYTLYTDLK VTEVASLFQV  60
   61 DPVSMLLSNS IDISYPDVEN HVLPAKLFLK IPITCSCVDG IRKSLSTHYK TRTSDTLGSI 120
  121 ADSVYGGLVS PEQIQVANSE TDLSVLDVGT KLVIPLPCAC FNGTDESLPA LYLSYVVRGI 180
  181 DTMAGIAKRF STSVTDLTNV NAMGAPDINP GDILAVPLLA CSSNFPKYAT DYGLIIPNGS 240
  241 YALTAGHCVQ CSCVLGSRSM YCEPASISVS CSSMRCRNSN FMLGNITSQQ SSSGCKLTTC 300
  301 SYNGFASGTI LTTLSMSLQP RCPGPQQLAP LIAPPDNVPK ELMYLPSPSP SPSPEFDDIA 360
  361 GGGSSIAAVP AASPGGATVS SSNSIPGNPA NGPGGSISIA SCPLSYYSFI ALLIPIGSCF 420
  421 FVF

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	423	0.94