YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ser-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIYHFNGVA LFLLPVLCLI GLIGNFLVCV AIATDRRLHN VTNYFLFSLA LADLLVCCIV  60
   61 MPLSIVVEVR HGVWTWSVSM CLLYVYSDVF LCSASIVHMS VISLDRYLGI SQPLRTRNRS 120
  121 KTLIFIKIAI VWVVTLLVSC PIAVLAMHDT ANILRNNQCM IFSRYYIIYG STMTFLIPLC 180
  181 IMGVTYAKTT QLLNKQASIL SQKAGDKFNG NGLRRTMPHR KLGYARTYSA TVNGTIANGK 240
  241 AIGAHGRTMS SISNIANGET ADRLGTSRPS INTNGHKQLQ KASTINKWKS RTSNLVTNFA 300
  301 NKVGRRSSLQ TATQDLANEH KATRVLAVVF ACFFICWTPF FFINFLIGFG GENVQIPDWV 360
  361 ASIFLWLGYV SSTINPIIYT VFNKRFRQAF VRILRCQCFH PLRDSHQMYS RNFTTTIVPD 420
  421 TYTCSRSNQE RTTSVITRDE TRSARSSERP EPSRARSEIS EEPVARTNGK LTSEKKKISL 480
  481 PSFPRVSSSR DSRATTEAST TDEETKPLIP KSTVPATVIN IPEQLINPIK KSLTTIINMP 540
  541 LLDETIPEKA QVHHKSQTLL TSSTLNFATF STCPQQPTRS YSCVDCKKAE KMLSSDVSDM 600
  601 MTTSTASTAS TVNGAPRKHL TLFNHFDSAI KETFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.93
Transmembrane Helix	9	33	0.89
Cytoplasmic	34	43	0.86
Transmembrane Helix	44	66	0.94
Non-Cytoplasmic	67	81	0.85
Transmembrane Helix	82	102	0.90
Cytoplasmic	103	122	0.91
Transmembrane Helix	123	146	0.94
Non-Cytoplasmic	147	165	0.92
Transmembrane Helix	166	187	0.94
Cytoplasmic	188	325	0.99
Transmembrane Helix	326	347	0.92
Non-Cytoplasmic	348	361	0.81
Transmembrane Helix	362	382	0.94
Cytoplasmic	383	635	0.99