YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GCAM_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTTAPSVYPL APVCGDTTGS SVTLGCLVKG YFPEPVTLTW NSGSLSSGVH TFPAVLQSDL  60
   61 YTLSSSVTVT SSTWPSQSIT CNVAHPASST KVDKKIEPRG PTIKPCPPCK CPAPNLLGGP 120
  121 SVFIFPPKIK DVLMISLSPI VTCVVVDVSE DDPDVQISWF VNNVEVHTAQ TQTHREDYNS 180
  181 TLRVVSALPI QHQDWMSGKE FKCKVNNKDL PAPIERTISK PKGSVRAPQV YVLPPPEEEM 240
  241 TKKQVTLTCM VTDFMPEDIY VEWTNNGKTE LNYKNTEPVL DSDGSYFMYS KLRVEKKNWV 300
  301 ERNSYSCSVV HEGLHNHHTT KSFSRTPGLD LDDVCAEAQD GELDGLWTTI TIFISLFLLS 360
  361 VCYSASVTLF KVKWIFSSVV ELKQTISPDY RNMIGQGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	346	0.88
Transmembrane Helix	347	370	0.65
Cytoplasmic	371	398	0.62