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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20087019, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVLKHFFFL LFLYVNNTSA INNPQEEFMD RFDINKNHVN IKWSNSGIHG KGKFKYEIEE  60
   61 RDVLSEGNES EKSTICPNHV KEGTYKLGCP DYGKTFLMGF EDNKYSEEFL NEISFGFLNK 120
  121 KYKLPIEIPL NKSGLSMYQG LFKRCPYNKK HYSMIKNENE YDMCFRKFYN NSNISTRIYK 180
  181 RGKQNRKYIY FSSHGLGGRL GANIEEPLHK YKNDEHYVTK KMRYPEKIKN LFDCSIYSHC 240
  241 IGPCLYKDFN NSCFLNLPIL FNHQTKECVI IGTHEEKRIH NCQSGSTDQN IQRCFLPVKK 300
  301 EKGNQWTYAS SFIRTDYMTK CPPRFPLNHT MFGYFNYSTG KCETYYMNHE KRTLSFSKCI 360
  361 ETLFNNIKKQ DDVNNSSFLW GVWTIENNAN EKTNLASMDN TGSCYFLKKK PTCVLKKENH 420
  421 FSFTILTANS FNLNQNIIYP ELKNNSSKEG SSLIHFKDPK QTNKRVLYEN NKKSKRNVRT 480
  481 KINSVNPFTI PSTLNTNEKE EYNKNEVKNY PNNNISYIQK VHSSFVNNRF NIHSDSSFKP 540
  541 IHKMIQMNIY TDNKLYNNNN QKIKDSNNNM NGMSVTQRSP SIGENQNGNP QQKYMERFDI 600
  601 PNNHIFIEWQ KEGEYGNDEF KYNIISNKTA GTSQSLFHNY KDKTCPNHVY EGRAHGSCPN 660
  661 YGKAIIVQNL LGEEYDKNFN LNFLNEIRTG YLNKYFKKDV EISYENSGIA MHNNMLRSCP 720
  721 VHENEEKLFS VKTDYNYKMC KSKIFSNRFT MKEYDPKTRL FMYYGLYGLG GRLGANIKRD 780
  781 KQKEKKYEDN ITLPMKNPSL IKNLFDCSIY SYCLGPCLEN SFGNKCFRNL PAYYNHLTNE 840
  841 CVILGTHEQE RTNSCRRTKE EKKKPNCQIL RKTTDSKDWT YVSSFIRPDY ETKCPPRYPL 900
  901 KSKVFGTFDQ KTGKCKSLMD KAYEVGINKF SVCLEYLFLV SPKDLYNSGR NNYWGIWAAD 960
  961 HSVNENNIEI ANGKCYHLVV KPTCVIDKEN HFSFTALTAN TVDFNQSVNI RKIEELTEYG1020
 1021 NNDDVLKEKE INNEPIDNVN ETKINRKSHV NSMERNKPSY KENEYDQMEK NVEDETYSEE1080
 1081 FGLFEEARKT ETGRIEEESK KKEAMKRAED ARRIEEARRA EDARRIEEAR RAEDARRVEI1140
 1141 ARRVEDARRI EISRRAEDAK RIEAARRAIE VRRAELRKAE DARRIEAARR YENERRIEEA1200
 1201 RRYEDEKRIE AVKRAEEVRK DEEEAKRAEK ERNNEEIRKF EEARMAHFAR RQAAIKAEEK1260
 1261 RKADELKKAE EKKKADELKK SEEKKKADEL KKKAEEKKKA DELKKKAEEK KKADELKKKA1320
 1321 EEKKKADEVK KAEEKKKADE LKKSEEKKKA DELKKSEEKK KADELKKKAE EKKKADELKK1380
 1381 KAEEKKKADE LKKKAEEKKK ADELKKKAEE KKKADELKKK AEEKKKADEL KKKAEEKKKA1440
 1441 ENLKKAEEKK KADELKKKAE EKKKADELKK KAEEKKKADE LKKKAEEKKK ADELKKAEEK1500
 1501 KKADELKKAE EKKKADELKK AEEKKKADEL KKAEELKKAE EKKKVEQKKR EEERRNMALR1560
 1561 RAEILKQIEK KRIEEVMKLY EEEKKMKAEQ LKKEEEEKIK AEQLKKEEEE KKKVEQLKKK1620
 1621 EEEEKKKAEQ LKKEEEENKI KAEQLKKKEE EEKKKAEELK KEEEEEKKKA EQLKKEEEEK1680
 1681 KKVEQLKKKE EEEKKKAEQL KKEEEENKIK VEQLKKEEEE EKKKAEELKK EEEEKKKVQQ1740
 1741 LKKEEEKKAE EIRKEKEAVI EEELKKEDEK RRMEVEKKIK DTKDNFENIQ EGNNKNTPYI1800
 1801 NKEMFDSEIK EVVITKNMQL NEADAFEKHN SENSKSSNKN ADFSKEKDLL EDDIENILET1860
 1861 DENEKINKDD IERSNNNMKG NNNDIIYTKL DVEEYKKRDV NETREKIIKI SKKNMCNNDF1920
 1921 SSKYCDYMKD NISSGTCSNE ERKSLCCSIS DFCLKYFDHN SNKYYDCTKI EFADPLYRCF1980
 1981 KKKEFSNMVY FAGAGIVLIL LFVIGSKMII GKWFEEATFD EMDLNYDKIY TLAMINNEET2040
 2041 QVSNPLSYSE ENIIK

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