YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4007665, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.91
Transmembrane Helix	25	44	0.89
Non-Cytoplasmic	45	78	0.93
Transmembrane Helix	79	99	0.95
Cytoplasmic	100	106	0.84
Transmembrane Helix	107	127	0.91
Non-Cytoplasmic	128	131	0.74
Transmembrane Helix	132	153	0.90
Cytoplasmic	154	164	0.89
Transmembrane Helix	165	187	0.90
Non-Cytoplasmic	188	205	0.94
Transmembrane Helix	206	228	0.92
Cytoplasmic	229	290	0.98
Transmembrane Helix	291	310	0.90
Non-Cytoplasmic	311	328	0.85
Transmembrane Helix	329	351	0.93
Cytoplasmic	352	358	0.91
Transmembrane Helix	359	378	0.94
Non-Cytoplasmic	379	389	0.85
Transmembrane Helix	390	415	0.86
Cytoplasmic	416	426	0.90
Transmembrane Helix	427	449	0.87
Non-Cytoplasmic	450	455	0.78
Transmembrane Helix	456	476	0.96
Cytoplasmic	477	504	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSSKDICS ENEGKKNGKS GFFSTSFKYV LSACIASFIF GYQVSVLNTI KNFIVVEFEW  60
   61 CKGEKDRLNC SNNTIQSSFL LASVFIGAVL GCGFSGYLVQ FGRRLSLLII YNFFFLVSIL 120
  121 TSITHHFHTI LFARLLSGFG IGLVTVSVPM YISEMTHKDK KGAYGVMHQL FITFGIFVAV 180
  181 MLGLAMGEGP KADSTEPLTS FAKLWWRLMF LFPSVISLIG ILALVVFFKE ETPYFLFEKG 240
  241 RIEESKNILK KIYETDNVDE PLNAIKEAVE QNESAKKNSL SLLSALKIPS YRYVIILGCL 300
  301 LSGLQQFTGI NVLVSNSNEL YKEFLDSHLI TILSVVMTAV NFLMTFPAIY IVEKLGRKTL 360
  361 LLWGCVGVLV AYLPTAIANE INRNSNFVKI LSIVATFVMI ISFAVSYGPV LWIYLHEMFP 420
  421 SEIKDSAASL ASLVNWVCAI IVVFPSDIII KKSPSILFIV FSVMSILTFF FIFFFIKETK 480
  481 GGEIGTSPYI TMEERQKHMT KSVV