YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18310507, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEINEKKTH KWKTIKRLLK YVAPYKWKTI GIILMLLLIM SCNTLNPYLM KVSIDKFVSA  60
   61 KDVNGLLGIG AVLLLLNIIA MILSKIRMLS MSKITNQILV NIRHELYTHI QTLSFSFFDN 120
  121 RPVGKILSRV VGDVNALNNL LNHSIVNLIP NLFTILLVIF MMFLMDPSLT LVCLTVLPFL 180
  181 FAGMFFIEIK SNKRWRVFRE NRSALLGYTH EAFSGMKVVQ GFNREEYSRE KFENHLEGHA 240
  241 GGFLHAVRLQ DYFWPTVDIC RGFGIAIVLF AGYKLTRGGN LSLGTLMAFI MYIEMLWRPI 300
  301 MNLSAFYNAF VTNLSAAERI FDIMDTKNDM VNNKEEERLP KIKGEIHFED VTFSYDNDGN 360
  361 HALKDVTFTL NPGEKIALVG ETGAGKTTIT NLISRFYEPT KGKIFIDGID ISTVDVESLR 420
  421 SQMGIMLQDS FLFASSIKEN ICYGKLDATD EEIIQAAKAV NAHNFIEKLE EGYNTNVNER 480
  481 GSRLSLGQRQ LIAFARALIS DPRILILDEA TANIDTETER LVQEGIKKLM EGRTSIVIAH 540
  541 RLSTIRDCDK IFVLSHGKIV EEGTHEELLN RKGYYYNLYC AQYSFLKEA

Type	Start	End	Confidence
Cytoplasmic	1	24	0.96
Transmembrane Helix	25	47	0.85
Non-Cytoplasmic	48	64	0.87
Transmembrane Helix	65	84	0.94
Cytoplasmic	85	143	0.94
Transmembrane Helix	144	164	0.88
Non-Cytoplasmic	165	168	0.77
Transmembrane Helix	169	189	0.92
Cytoplasmic	190	277	0.82
Transmembrane Helix	278	297	0.72
Non-Cytoplasmic	298	589	0.54