YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18144401, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENINLFIVF IEGILSIFSP CILPILPIYL SMLSNSSVED IRDSNFKSGV LIRNTLFFTL  60
   61 GISTTFFILG SSISALSSFF NTNKNIIMIL GGVIILFMGL FYLGLINLNI LNREKRLNFK 120
  121 YKNMSPVSAF VLGFTFSFGW TPCIGPILAS VLVMASSSKN LLMSNLLILV YTIGFILPFI 180
  181 IASLFYGKLF KKFDGIKKHM DLIKKISGIF IIIAGLIMLV GGIRNMNNEI KINNNPQINK 240
  241 SESVNKDSKN ESDNKKQEEE NKIPPIDFTL YDQYGNKHTL SEYKGKTIFL NFWATWCPPC 300
  301 RGEMPYIDEL YKEYNENKDD VVILGVASPN LGREGSEEHI KNFLKEENHV FPVVLDENGA 360
  361 MVYQYGINAF PSTFIINKEG YITKYIPGAM TKETMKTLIE SER

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.90
Transmembrane Helix	8	30	0.87
Cytoplasmic	31	50	0.88
Transmembrane Helix	51	76	0.82
Non-Cytoplasmic	77	85	0.87
Transmembrane Helix	86	108	0.93
Cytoplasmic	109	126	0.89
Transmembrane Helix	127	149	0.90
Non-Cytoplasmic	150	166	0.77
Transmembrane Helix	167	187	0.94
Cytoplasmic	188	205	0.84
Transmembrane Helix	206	223	0.96
Non-Cytoplasmic	224	403	0.99