YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51589250, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREMVDTTTV DTTTVTKTTT GEKKLTASDI RGVFLRSNLF QGSWNFERMQ ALGFCFSMVP  60
   61 AIRRLYPENS EERKQAIKRH LEFFNTQPFV AAPILGVTLA MEEQRANGAE IDDAAINGIK 120
  121 VGLMGPLAGV GDPIFWGTVR PVFAALGAGI AMSGSLLGPL LFFVLFNVVR LLTRYYGVAY 180
  181 GYKKGVNIVN DMGGGFLQKL TEGASILGLF VMGALVNKWT HVNIPVVVSR ITNPAGETTV 240
  241 TTVQTILDQL MPGLVPLLLT FGCMWLLRRK VNALWIIMGF FAIGIFGYWI GFLAP

Type	Start	End	Confidence
Cytoplasmic	1	82	0.76
Transmembrane Helix	83	101	0.48
Non-Cytoplasmic	102	142	0.53
Transmembrane Helix	143	166	0.90
Cytoplasmic	167	199	0.73
Transmembrane Helix	200	221	0.66
Non-Cytoplasmic	222	245	0.69
Transmembrane Helix	246	266	0.70
Cytoplasmic	267	272	0.79
Transmembrane Helix	273	292	0.96
Non-Cytoplasmic	293	295	0.78