YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|165927974, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.96
Transmembrane Helix	19	40	0.89
Non-Cytoplasmic	41	46	0.67
Transmembrane Helix	47	65	0.91
Cytoplasmic	66	94	0.83
Transmembrane Helix	95	117	0.77
Non-Cytoplasmic	118	123	0.83
Transmembrane Helix	124	145	0.90
Cytoplasmic	146	154	0.82
Transmembrane Helix	155	176	0.91
Non-Cytoplasmic	177	198	0.88
Transmembrane Helix	199	221	0.90
Cytoplasmic	222	239	0.93
Transmembrane Helix	240	261	0.93
Non-Cytoplasmic	262	281	0.91
Transmembrane Helix	282	303	0.91
Cytoplasmic	304	330	0.94
Transmembrane Helix	331	353	0.91
Non-Cytoplasmic	354	359	0.85
Transmembrane Helix	360	381	0.93
Cytoplasmic	382	398	0.94
Transmembrane Helix	399	421	0.90
Non-Cytoplasmic	422	426	0.77
Transmembrane Helix	427	446	0.93
Cytoplasmic	447	457	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQQLQNSSL KRGLKNRHIQ LIALGGAIGT GLFLGIAQTI NMAGPSVILG YAIGGFIAFL  60
   61 IMRQLGEMVV EEPVAGSFSH FAYKYWGDFA GFLSGWNYWA MFILVGMAEL TAVGIYIQYW 120
  121 WPEIPTWVSA AVFFIIINAI NLVNVRLYGE TEFWFAIIKV AAIIGMIVFG AYLLASGSGG 180
  181 PAASVTNLWA QGGFMPHGFR GLIMAMAVIM FSFGGLEMVG ITAAEAEDPR NSIPKATNQV 240
  241 VYRILIFYIG SLTVLLSLFP WNNVVEGGSP FVMIFDALDS PWVATALNVV VLTAALSVYN 300
  301 SGVYCNSRML FGLASQGNAP KLLTKLNKRG VPIRSIALSA LATSAGVVIN YIMPGKAFEL 360
  361 LMALVVSTLV INWVMICLAH LKFRKAKVKE GVVPRFKALW YPYGNYLCLV FLALILVIMY 420
  421 LTEGIRISVL MMPVWIALLW CGFVLTRRKC PKTVTSL