YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|166009838, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.97
Transmembrane Helix	25	47	0.91
Non-Cytoplasmic	48	55	0.80
Transmembrane Helix	56	79	0.79
Cytoplasmic	80	105	0.77
Transmembrane Helix	106	125	0.88
Non-Cytoplasmic	126	133	0.80
Transmembrane Helix	134	153	0.95
Cytoplasmic	154	162	0.88
Transmembrane Helix	163	186	0.90
Non-Cytoplasmic	187	203	0.89
Transmembrane Helix	204	228	0.83
Cytoplasmic	229	248	0.94
Transmembrane Helix	249	270	0.92
Non-Cytoplasmic	271	294	0.94
Transmembrane Helix	295	317	0.87
Cytoplasmic	318	350	0.87
Transmembrane Helix	351	369	0.95
Non-Cytoplasmic	370	375	0.76
Transmembrane Helix	376	398	0.90
Cytoplasmic	399	418	0.88
Transmembrane Helix	419	438	0.96
Non-Cytoplasmic	439	450	0.84
Transmembrane Helix	451	471	0.92
Cytoplasmic	472	503	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQQNTKIPA QQGAQRLRRE LKSRHLAMIA IGGSIGTGLF VASGATVSQA GPGGALLSYA  60
   61 LIGLMVYFLM TSLGELAAFM PVSGSFSTYG SKYVEEGFGF ALGWNYWYNW AVTIAVDLVA 120
  121 AQLVMNYWFP DAPGWIWSAL FLGLMFLLNY ISVKGFGEAE YWFSLIKVTT VVIFIIVGVM 180
  181 MITGIMKGGE TAGWHNWTIG DAPFAGGFSA MIGVAMIVGF SFQGTELIGI AAGESKDPGK 240
  241 NIPKAIRKVF WRILLFYIFA ILIISLIIPY TDPSLLRNDV KDISVSPFTL VFQNAGLLSA 300
  301 AAVMNAVILT AVLSAGNSGM YASTRMLFTL ASEGKAPRIF AKLSKGGVPR NALYATTVVA 360
  361 GLCFLSSMFG NQTVYLWLLN TSGMTGFIAW LGIAISHYRF RRGYMMQGRD LNDLPYQSGF 420
  421 FPLGPIFAFV LCLIITLGQN YQAFLQDRID WYGVTATYIG IPLFLVIWFG YKLSRGTRVV 480
  481 KYQEMEFPKW RDESEEHQKP TSR