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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|55742200, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.66
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIHYSEAAS ILIILQSLWW GLNCQCEEPI ESSKLDLSVT YDLPYFVSDT PIQKLLEING  60
   61 TVYVGAVNRL YALSKDLKKK HEYKTGPVHE GPDCKTPTDQ CSGCENKPRN INNTNMALLM 120
  121 ETFYDLELFS CGSVGNGVCS RHVLEDGPLG AEVTCMYTKK NEGSSHGCPD CLAGPAGTQI 180
  181 LNIMSGRVVR FFVANSEPLE SNGPRLHHTI SIRKMRETQD GFEFFSEQSY MDLAPSLRGN 240
  241 YPLHYVYSFQ SGPYVYFLTV QREGGNSKAF HTRIVRMCSS DSEILRYVEM PFECIYSERR 300
  301 RKKRSAQVVF NVLQAAHVAK VGYDFQQEMG LKEGEDVLFA AFARSKPDSP EPTASSAVCL 360
  361 ISITDINEFF KVFIQKGYTR KLHHFPGSEE KTFNQTFVGD SFSCGKHERG YRLEVTSTNP 420
  421 RRDYFHGRFR NVLLTSIAVV PIQNHTVVSL GTAEGRVIQV VVSRFGKTEP HVDFRLDMLP 480
  481 VSSEMALLSP QHHNGSLLLI TGDKVSKLPV IGPGCEQLWT CSSCLLAPGF MGCGWCRTSN 540
  541 RCTRAPRCPQ SQWIQDSCPL LITSISPSSA PLRGQTNITI CGKNFGFNKK DRFDTKLVDV 600
  601 VVAGTKCKLE RKDSNNNRLV CGLDYVNWSS LDSVITVRSG KEQAQKDGFS FVNPVIIEIF 660
  661 PEFGPQSGGT MLTISGSFLD SGNVQTVTVG NATCVLQSVS ATMLTCRTPP QPSPSQHKVQ 720
  721 LHIDGVIFEA PVSYTYNKNP HISSVQPKHS FISGGSTVTV NGFYLHSALQ PQMVLTAATE 780
  781 GKLFQVTCSH DEDKRNILCI TPSLKGLSVQ PPVATKMTFV LDGFSTDQYD LLYVEDPKFE 840
  841 EFQKPTVTPR GKKNILEIKV PPVNQEAVKN GEVLRVSNRT CESVTLVGNT LECTVPMELQ 900
  901 TAAKELEVEW KQATSSVILG RVILAQDQDY RILITGGVCV SILLLLLIAV FVWIKRKKHI 960
  961 DDLAKTMVWY DGRAHIPHLD MLANARSVSP TDEMVSHESV DYRTTLLEDQ NLPLSQTESC1020
 1021 RPHLYAHSHV DLSPMLGPME GDLASPLLPS TAPIDLGSLH PELLKXVQHV VIAREDLLLH1080
 1081 VNEIIGRGHF GCVFHGTLLE PDGQKQHCAI KSLNRITDIE EVSQFLKEGI IVKDFSHPNV1140
 1141 LSLLGICLPS EGSPLVVLPY MKHGDLRNFI RDESHNPTVK DLMGFGLQVA KGMEYLASKK1200
 1201 FVHRDLAARN CMLDESYTVK VADVGLARDV YDKEYYSVHN KHGVKLPVKW MALESLQTHK1260
 1261 FTTKSDVWSF GVLLWELMTR GAPPYSDVNS FDITVFLLQG RRLLQPEFCP DALYNVMIEC1320
 1321 WHPKPERRPT FLELVSRISA IFSSFSGEHY ILLNTTYVNI DKMTPYPSLI SSQSNLDRDC1380
 1381 CT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle