YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CFTR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.96
Transmembrane Helix	76	97	0.76
Non-Cytoplasmic	98	118	0.84
Transmembrane Helix	119	143	0.83
Cytoplasmic	144	194	0.90
Transmembrane Helix	195	216	0.88
Non-Cytoplasmic	217	222	0.67
Transmembrane Helix	223	241	0.96
Cytoplasmic	242	303	0.95
Transmembrane Helix	304	323	0.95
Non-Cytoplasmic	324	330	0.68
Transmembrane Helix	331	351	0.64
Cytoplasmic	352	853	0.65
Transmembrane Helix	854	878	0.90
Non-Cytoplasmic	879	907	0.61
Transmembrane Helix	908	937	0.71
Cytoplasmic	938	980	0.91
Transmembrane Helix	981	1003	0.89
Non-Cytoplasmic	1004	1008	0.77
Transmembrane Helix	1009	1029	0.92
Cytoplasmic	1030	1095	0.80
Transmembrane Helix	1096	1117	0.87
Non-Cytoplasmic	1118	1123	0.58
Transmembrane Helix	1124	1143	0.77
Cytoplasmic	1144	1476	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKSPLEKAS FISKLFFSWT TPILRKGYRH HLELSDIYQA PSSDSADHLS EKLEREWDRE  60
   61 QASKKKPQLI HALRRCFVWR FVFYGVLLYL GEVTKAVQPV LLGRIIASYD PDNTEERSIA 120
  121 IYLGIGLCLL FIVRTLLLHP AIFGLHHIGM QMRIAMFSLI YKKTLKLSSR VLDKISIGQL 180
  181 ISLLSNNLNK FDEGLALAHF IWIAPLQVVL LMGLLWDLLQ FSAFCGLGLL IVLVIFQAIL 240
  241 GKMMVKYRDK RAAKINERLV ITSEVIDNIY SVKAYCWESA MEKIIESLRE EELKMTRRSA 300
  301 YMRFFTSSAF FFSGFFVVFL SVLPYTVING IVLRKIFTTI SFCIVLRMSV TRQFPTAVQI 360
  361 WYDSLGMIRK IQDFLQTQEY KVLEYNLMFT GLVMENVTAF WEEGFQELLE KVQLNNDDRK 420
  421 TSNGENHLSF SHLCLVGNPV LKNINLNIKK GEMLAITGST GAGKTSLLML ILGELEASEG 480
  481 IIKHSGRVSF SSQISWIMPG TIKENIIFGV SYDEYRYKSV VKACQLQEDI TKFAEQDNTV 540
  541 LGEGGVTLSG GQRARISLAR AVYKDADLYL LDSPFGYLDV LTEEQIFESC VCKLMASKTR 600
  601 ILVTSKMEQL KKADKILILH EGSSYFYGTF SELQSLRPDF SSKLMGYDTF DQFTEERRSS 660
  661 ILTETLRRFS VDDASTTWNK AKQSFRQTGE FGEKRKNSIL SSFSSVKKIS IVQKTPLSIE 720
  721 GESDDLQERR LSLVPDSEHG EAALPRSNMI TAGPTFPGRR RQSVLDLMTF TPSSVSSSLQ 780
  781 RTRASIRKIS LAPRISLKEE DIYSRRLSQD STLNITEEIN EEDLKECFFD DMVKIPTVTT 840
  841 WNTYLRYFTL HRGLFAVLIW CVLVFLVEVA ASLFVLWLLK NNPVNGGNNG TKIANTSYVV 900
  901 VITSSSFYYI FYIYVGVADT LLALSLFRGL PLVHTLITAS KILHRKMLHS ILHAPMSTFN 960
  961 KLKAGGILNR FSKDIAILDD FLPLTIFDFI QLLFIVVGAI IVVSALQPYI FLATVPGLAV1020
 1021 FILLRAYFLH TSQQLKQLES EGRSPIFTHL VTSLKGLWTL RAFRRQTYFE TLFHKALNLH1080
 1081 TANWFMYLAT LRWFQMRIDM IFVLFFIVVT FISILTTGEG EGTTGIILTL AMNIMSTLQW1140
 1141 AVNSSIDTDS LMRSVSRVFK FIDIQTEESI CTKIMKELHS EDSPNALVIK NEHVKKCDTW1200
 1201 PSGGEMVVKD LTVKYVDDGN AILENISFSI SPGQRVGLLG RTGSGKSTLL SAFLRMLNIK1260
 1261 GEIQIDGVSW NSMTLQEWRK AFGVITQKVF IFSGTFRQNL DPNGKWRDEE IWKVADQVGL1320
 1321 KSVIEQFPGQ LNFTLVDGGY VLSHGHKQLM CLARSVLSKA KIILLDEPSA NLDPITYQVI1380
 1381 RRVLRQAFAG CTVVLCEHRI EAMLDCQRFL VIEQGNVWQY ESLQALLSEK SVFQRALSSS1440
 1441 EKMKLFHGRH SSKQKPRTQI TAVKEETEEE VQETRL