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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54400746, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALVFTATF ALIIWIPTFV LTARVYPPNE VTLLDSRTVQ GELKWVASPT EGGWEEVSIM  60
   61 DEKNTPIRTY QVCNVMEPSQ NNWLRTDWIP RGGAQRVYIE IKFTLRDCNS LPGVMGTCKE 120
  121 TFNLYYYESN NDKERYIREN QFTKIDTIAA DESFTQVDIG DRIMKLNTEV RDVGILTRKG 180
  181 FYLAFQDVGA CIALVSVRIF YKKCPLTVRN LAQFPDTTTG ADTSSLVEVR GSCVDNSEER 240
  241 EVPKMYCGAD GEWLVPIGNC LCNPGYEEHE GTCQACKIGN YRALATDGSC SKCPLHSYSV 300
  301 REGSTSCACD KGFFRSETDP ASMPCTQPPS APQHLISNVN ETSVNLEWTA PASSGGRQDL 360
  361 AYNVICKRCS SDGQRCQPCG NGIHFSPQQL GLRTTRVSIN DLQAHTNYTF EIWAVNGVSK 420
  421 QSPGPEQAVS VTVTTNQAAP SPVTTIQAKD ITRHAVSLAW QQPERPNGVI LEYEVKYYEK 480
  481 DQNERSYRIM KTSSRSAEIK GLSPLTSYVF HVRARTAAGY GEFSAPFEFM TNSVPSPIIG 540
  541 DGANSTVLLV SVIGSVILLL IFIGVFIISR RRSKYSKAKQ DSDEERHLHP GVRIYVDPFT 600
  601 YEDPNQAVRE FAKEIDASCI KIEKVIGIGE FGEVCSGRLK MPGKREICVA IKTLKAGYTD 660
  661 KQRRDFLSEA SIMGQFDHPN IIRLEGVVTK CKPVMIITEY MENGSLDAFL RKNDGRFTVI 720
  721 QLVGILRGIA SGMKYLSDMS YVHRDLAARN ILVNSNLVCK VSDFGMSRVL EEDPDAAYTT 780
  781 RGGKIPIRWT APEAITYRKF TSASDVWSYG IVMWEVMSYG ERPYWDMSNQ DVIKAIEEGY 840
  841 RLPPPMDCPV SLHQLMLDCW QKERAERPKF SQIVNMLDKL IRNPNSLKRT GGEIARPNTT 900
  901 LLEPSSPEFT STLGSVADWL QAINMERYRD NFTAAGYTTP EAVVHMTQED MTRIGISTAA 960
  961 HQDKILNSAQ GMLSQMQQMQ DRMVPV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle