YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DMTA2_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLRPEIPPA SQAGSQVHPG AAAAAAAAAS IPVSMAGSLL RAPPLLLRAT EKYPRTPKCA  60
   61 RCRNHGVVSA LKGHKRYCRW KDCMCAKCTL IAERQRVMAA QVALRRQQAQ EENEARELQL 120
  121 LYGTAEGLAL AAANGIIPPR QNYEVFGPVS NESNSGESNI QKFELFPKTP LPGTVTPHQA 180
  181 AGKSVSTDTE SVPGMSSPDM RHGSGSENGD RESIVSSPIA KPLKDGEETP GSISPIGSDS 240
  241 GSDTDKDEQE PSPSSAASRQ MNAIDILTRV FPNHKRSVLE LVLQGCGKNV VQAIEQILNN 300
  301 SGQAKGPEET WTAERMLQSV QPTMSSTPRP MLPGTMTLSN RSAFSPLQPN APHFGSDPST 360
  361 YPLSTHLGLN PLRLAYSAHS RGLAFMAPYS TTGLMPTLGF RPPMDYAFSD LIRDRTLLHK 420
  421 DQSYTNGLYG PLVNNTQEKQ

Type	Start	End	Confidence
Signal Peptide	1	36	0.35
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	440	0.84