YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213649714
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSIFIIFC LIAVSAFFSI SEISLAASRK IKLKLLADEG SINAQRVLKM QENPGMFFTV  60
   61 VQIGLNAVAI LGGIVGDAAF SPAFSALFSH YMSPELSEQL SFILSFSLVT GLFILFADLT 120
  121 PKRIGMIAPE AVALRIINPM RFCLFVFRPL VWLFNGMANN IFRLFKIPMV RKDDITSDDI 180
  181 YAVVEAGALA GVLRKQEHEL IENVFELESR TVPSSMTSRE SIIWFDLHED EQSLKKKVAE 240
  241 HPHSKFLVCN EDIDHIIGYV DSKDLLNRVL ANQSMALNSG VQIRNTLIVP DTLTLSEALE 300
  301 SFKTAGEDFA VIMNEYALVV GIITLNDVMT TLMGDLVGQG LEEQIVARDE NSWLVDGGTP 360
  361 IDDVMRVLDI DEFPQSGNYE TIGGFMMFML RKIPKRTDSV KFSGYKFEVV DIDNYRIDQL 420
  421 LVTRLDNKSN VPAPKLPDAQ GKEDSAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.94
Transmembrane Helix	5	26	0.93
Cytoplasmic	27	55	0.95
Transmembrane Helix	56	80	0.86
Non-Cytoplasmic	81	99	0.87
Transmembrane Helix	100	119	0.94
Cytoplasmic	120	136	0.89
Transmembrane Helix	137	158	0.79
Non-Cytoplasmic	159	447	0.92